PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_006520
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family ERF
Protein Properties Length: 152aa    MW: 17146.5 Da    PI: 8.662
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_006520genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.39.5e-192776255
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 gy+GVr+++ +grWv+eIr+p++   +kr++lg+f tae+Aa+a++ a   l+g
  DCAR_006520 27 GYRGVRQRH-WGRWVSEIREPRK---KKRIWLGSFKTAEMAARAHDVACFHLRG 76
                 8*******9.**********843...6*******************99888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.3E-332790IPR001471AP2/ERF domain
PROSITE profilePS5103223.1432784IPR001471AP2/ERF domain
PfamPF008478.1E-132776IPR001471AP2/ERF domain
SuperFamilySSF541715.95E-222786IPR016177DNA-binding domain
PRINTSPR003672.1E-102839IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-312885IPR001471AP2/ERF domain
CDDcd000188.88E-322884No hitNo description
PRINTSPR003672.1E-105066IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MNSTKVTSKN VLKSQGKCVE NSRQSNGYRG VRQRHWGRWV SEIREPRKKK RIWLGSFKTA  60
EMAARAHDVA CFHLRGDKSL LNFPQEIEFL PRPCSSDPKD IRAASCQAAG LRTVGIDKEE  120
GNASGDDFWT ELELPELLDF DILFNDVLVV P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-182887666ATERF1
3gcc_A3e-182887666ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00120DAPTransfer from AT1G01250Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017234491.11e-110PREDICTED: ethylene-responsive transcription factor ERF023-like
SwissprotQ1ECI23e-38ERF23_ARATH; Ethylene-responsive transcription factor ERF023
TrEMBLA0A162ATI61e-109A0A162ATI6_DAUCS; Uncharacterized protein
STRINGVIT_15s0046g00310.t016e-41(Vitis vinifera)
STRINGMigut.N01538.1.p5e-41(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA138741314
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01250.11e-40ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]