PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_006548
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family bHLH
Protein Properties Length: 504aa    MW: 56081.3 Da    PI: 6.957
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_006548genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.49.3e-12329375354
                  HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  ++h e+Er RR+++N++f  Lr+++P+       +++Ka+ L  Av YI++L
  DCAR_006548 329 QNHVEAERLRREKLNHRFYALRSVVPNV-----SRMDKASLLADAVTYINEL 375
                  68*************************6.....4***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.0E-4324221IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474591.28E-16325389IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.361326375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.27E-13329380No hitNo description
PfamPF000102.2E-9329375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.5E-16329390IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.7E-15332381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    Send to blast
MEDLISSSSS SSFLCHGGAS PTIQQRLQFI MQSRPEWWMY YIFWQTSKDS STDRLVLSWG  60
DGHFRGNKDF MLKAANSNIG LGPQDQPQQP QQPHPKFGFE LERRKVAKGI QSLFTDSLPG  120
IDGVVEADFP DSEWFFMVSV TRSFAAGEDN TVGRAFSSGS YVWLAGDHEL QFQNCDRAKE  180
AYLHGIKTLV CISTPCGIIE LGSSYVIKED WGLIHLAKSL FSPDNNGTTN IMPISNMSSP  240
SAIAHAPPQN PTRSLSFFDI NAVSGDQNRT SGDEDGNVKP EKKLTKVGRS SSDSENSDFE  300
STLAPDSSMN TRMKKRGRKA ATSGRELAQN HVEAERLRRE KLNHRFYALR SVVPNVSRMD  360
KASLLADAVT YINELKSKVE DLEVKLREEM KKSKCITDVV YDTQSTSTNV YHTARSSMSY  420
GPVNMEVDVK ILGSQAMIRV QSPDVNYPAA RLMDALRLLE FRIHHASVSS VKEIMLQDVV  480
IKVPDGLTSE DALKTVLLRT LQM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A6e-32222228193Transcription factor MYC3
4rqw_B6e-32222228193Transcription factor MYC3
4rs9_A6e-32222228193Transcription factor MYC3
4yz6_A6e-32222228193Transcription factor MYC3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017232903.10.0PREDICTED: transcription factor MYC2-like
TrEMBLA0A166DUV20.0A0A166DUV2_DAUCS; Uncharacterized protein
STRINGcassava4.1_024442m1e-165(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10722185
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.12e-70bHLH family protein