PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_006552
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family bHLH
Protein Properties Length: 482aa    MW: 53989.6 Da    PI: 6.4533
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_006552genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.77.3e-12301347354
                  HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  ++h e+Er RR+++N++f  Lr+++P+       +++Ka+ L  Av YI++L
  DCAR_006552 301 QTHVEAERLRREKLNHRFYALRSVVPNV-----SRMDKASLLGDAVTYINEL 347
                  69*************************6.....4***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.4E-3824199IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474597.98E-17296362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.342298347IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.66E-13301352No hitNo description
PfamPF000102.0E-9301347IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.5E-16302360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-15304353IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MEDIISSSSS SIFPCHGSPS PTIQERLQFI LQNRPEWWTY YIFWQTSNHN ATDDRLVLSW  60
GDGQFRGSNT SNFGFESERG KVIRGIQSLF ADSRTSGGDR VFVDSEFPSC EWFFMVSVTR  120
SFVVGDDNIV SRTFGSGSYE WLVGDEELQF NACERAKEAY LHGVKTLACI PTSCGIIELG  180
SSNVIRQDWG LVHLAQSVFG PDNKNMITCP PNSSTHQNPN RGLSFLDMNA GFPREHIKST  240
NSNEEEENVG KKLKIAQSSP ELGNSESESL LDSHQTTLMN LRSSNKRLRR TTTSSGREVA  300
QTHVEAERLR REKLNHRFYA LRSVVPNVSR MDKASLLGDA VTYINELKSK VEELDGKLRE  360
EVRRSRYITD AFYNDPSLIQ SISTTSHASG ARSLLLSCGR IQMEVDIKIL GSRAMIHVQS  420
PDINYPWARL MDALRILEFR VHHASVSSVK DLILQDVVIK VPDGITDEEG LKSAILGTLQ  480
I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A7e-29221998192Transcription factor MYC3
4rqw_B7e-29221998192Transcription factor MYC3
4rs9_A7e-29221998192Transcription factor MYC3
4yz6_A7e-29221998192Transcription factor MYC3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017234394.10.0PREDICTED: transcription factor MYC2-like
TrEMBLA0A161X4410.0A0A161X441_DAUCS; Uncharacterized protein
STRINGcassava4.1_024442m1e-138(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10722185
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.11e-60bHLH family protein