PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_006572
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family B3
Protein Properties Length: 445aa    MW: 49974.5 Da    PI: 7.0804
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_006572genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3102.81.9e-3235139199
                  EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE.. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefel 92 
                  f+kv tpsdv+k++rlv+pk++ae++    ++ +e++  l +ed+sg++W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  g+  + +l
  DCAR_006572  35 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSTNEKGLLLNFEDRSGKQWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDVVSFQRGmGEiGRDRL 132
                  89***************************966778999*************************************************66588999999 PP

                  EEEEE-S CS
           B3  93 vvkvfrk 99 
                  ++ ++r+
  DCAR_006572 133 FIDWRRR 139
                  9999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.2E-4229147IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.98E-3032139IPR015300DNA-binding pseudobarrel domain
CDDcd100171.48E-2733134No hitNo description
PfamPF023621.2E-2935139IPR003340B3 DNA binding domain
SMARTSM010199.4E-2335140IPR003340B3 DNA binding domain
PROSITE profilePS5086314.83335140IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MMMIDNNGGE NDVDEVIIEG RRRDGHVIVE KEHMFDKVVT PSDVGKLNRL VIPKQHAEKY  60
FPLDSSTNEK GLLLNFEDRS GKQWRFRYSY WNSSQSYVMT KGWSRFVKEK KLDAGDVVSF  120
QRGMGEIGRD RLFIDWRRRP DAPSSSASSH YHHLLGTGLV PSASSLALQP QYYSSFQRAS  180
NAPWSPSLFL QQQQQQPLSS TPQYYPNYPH NYRDQYSSHL LLPPPPNVTG HHNPHSHFYH  240
PTNYMSATRS TAHHHPLVSP AGPCSGSVIY YNRSAPFSQE QEQQHEEDVE MAQAQRAGWG  300
EFEPNVVFES VPVVHGKTAP KRLRLFGVNM ECPINTSGSS NSDDNIIVEC DNNMTILSSS  360
STASAMNIPN IRTSQGPYPY NFCSSAPPQP LPPLMSNPYD TSSSNIPYVQ LSPQTATTST  420
TSTLHDLMNK GKMSMSFDRN EGHS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A2e-66281401114B3 domain-containing transcription factor NGA1
5os9_B2e-66281401114B3 domain-containing transcription factor NGA1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017232321.10.0PREDICTED: B3 domain-containing protein Os03g0120900-like
RefseqXP_017232322.10.0PREDICTED: B3 domain-containing protein Os03g0120900-like
RefseqXP_017232323.10.0PREDICTED: B3 domain-containing protein Os03g0120900-like
RefseqXP_017232324.10.0PREDICTED: B3 domain-containing protein Os03g0120900-like
TrEMBLA0A161X4590.0A0A161X459_DAUCS; Uncharacterized protein
STRINGPGSC0003DMT4000318632e-94(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28172350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.15e-63B3 family protein