PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_006595

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

NF-YC

Protein Properties

Length: 285aa MW: 31129.2 Da PI: 4.8083

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_006595	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	58.6	1.3e-18	6	86	18	98
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P arikki++adedv +i+ +Pvl+ska elf+ +l r++ + ++ +t+ ++ +v++ ++fdfl ++v + DCAR_006595 6 DTRFPAARIKKIMQADEDVGKIAMAVPVLVSKALELFLQDLCDRTYDITLQKGAKTVSSLHLKHCVQSYNVFDFLKEVVSK 86 5789************************************************************************99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	2.5E-26	3	72	IPR009072	Histone-fold
SuperFamily	SSF47113	2.73E-20	4	89	IPR009072	Histone-fold
Pfam	PF00808	2.2E-19	8	71	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence Send to blast
MRKKLDTRFP AARIKKIMQA DEDVGKIAMA VPVLVSKALE LFLQDLCDRT YDITLQKGAK 60 TVSSLHLKHC VQSYNVFDFL KEVVSKVPDY THSEAGGDDA NVTKRRKVTS EEANDSDEES 120 KRNRMHEASH VSSSSKGRGR GRGRGRGRGR SARSAADKEA SQTEFDSESC NNNQNLVPGA 180 ATGVVDEGSE LKELPKDSIN VDNGSNSAPR NFDLNADLDE NVVDKTPTEA TGCLPSAKPA 240 VPKSEDEYPG WSLSEVDRIA IDPAHLAQLN SRMDDDDEDY DEEG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	7e-22	2	72	5	75	Transcription Regulator NC2 alpha chain
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	139	148	RGRGRGRGRG
2	139	149	RGRGRGRGRGR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017231871.1	0.0	PREDICTED: dr1-associated corepressor-like
TrEMBL	A0A166DW12	0.0	A0A166DW12_DAUCS; Uncharacterized protein
STRING	XP_006432367.1	1e-102	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7960	22	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	3e-71	nuclear factor Y, subunit C11

Link Out ? help Back to Top
Phytozome	DCAR_006595