PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_006686

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

bZIP

Protein Properties

Length: 380aa MW: 42633 Da PI: 8.9951

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_006686	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	22.9	1.9e-07	243	289	17	63
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 17 ArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 A+rsR RK+++i+eLe+ v++L+a+ ++ ele l+++ l +e+ DCAR_006686 243 AQRSRVRKLQYIAELERNVQALQAKGSEVSAELEFLNQQNLILSMEN 289 89***********************************9998887776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	0.0027	232	291	IPR004827	Basic-leucine zipper domain
CDD	cd14703	4.37E-15	234	282	No hit	No description
Gene3D	G3DSA:1.20.5.170	3.1E-5	243	286	No hit	No description
SuperFamily	SSF57959	1.83E-5	243	285	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 380 aa Download sequence Send to blast
MANSKGPSSY KNVLYNGKHS LLPPKSPFPS ISPSYLDYVQ TSTIGVKGLP KPREGYQHHQ 60 RTSSESTLIE DQPSWLDELL NEPETPVRRG HRRSSSDSFA YMEVANANLN YATQDEYRSR 120 NMSPVPSRTS QDFDYYKDVR CDSFYPDVNP LGKSKSRVWD PPSNSLAHPV GPLSVKDNSA 180 IQNSVSSFST QETDGFASNT TEKQNPIESS PYDAKASSEK KDSSYAKASA SETDTKRSKQ 240 QFAQRSRVRK LQYIAELERN VQALQAKGSE VSAELEFLNQ QNLILSMENK ALKQRLENVS 300 QEQVIKYLEH DVLEREIGRL RALYQQQQQP PQQLPSSGHR RANSRDTNSK DLDSQFANLS 360 LKHKDSSSGR DAVSGPLHI*

Sequence ? help Back to Top

Protein Sequence Length: 380 aa Download sequence Send to blast

MANSKGPSSY KNVLYNGKHS LLPPKSPFPS ISPSYLDYVQ TSTIGVKGLP KPREGYQHHQ  60
RTSSESTLIE DQPSWLDELL NEPETPVRRG HRRSSSDSFA YMEVANANLN YATQDEYRSR  120
NMSPVPSRTS QDFDYYKDVR CDSFYPDVNP LGKSKSRVWD PPSNSLAHPV GPLSVKDNSA  180
IQNSVSSFST QETDGFASNT TEKQNPIESS PYDAKASSEK KDSSYAKASA SETDTKRSKQ  240
QFAQRSRVRK LQYIAELERN VQALQAKGSE VSAELEFLNQ QNLILSMENK ALKQRLENVS  300
QEQVIKYLEH DVLEREIGRL RALYQQQQQP PQQLPSSGHR RANSRDTNSK DLDSQFANLS  360
LKHKDSSSGR DAVSGPLHI*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017235646.1	0.0	PREDICTED: uncharacterized protein At4g06598-like
Swissprot	Q8W3M7	1e-60	Y4598_ARATH; Uncharacterized protein At4g06598
TrEMBL	A0A161XFZ8	0.0	A0A161XFZ8_DAUCS; Uncharacterized protein
STRING	EOX98112	1e-168	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2765	17	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58110.2	4e-92	bZIP family protein

Link Out ? help Back to Top
Phytozome	DCAR_006686

Publications ? help Back to Top
Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4. DNA Res., 2001. 8(6): p. 285-90 [PMID:11853315]