PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_006720

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

LBD

Protein Properties

Length: 797aa MW: 88775.3 Da PI: 5.4981

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_006720	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	100.7	1.4e-31	546	647	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 aCaaCk++ r+ +dC l+p fpa+qpk f+ vh+lFG+s+v+k+lk++++++ + dam+s+++e+ +r + Pv+G++g+i++l q+l+q+ +el+++ DCAR_006720 546 ACAACKFQTRRYHSDCSLSPFFPADQPKIFNDVHRLFGVSKVIKILKKMRDHDqKVDAMKSIIFESYIREKYPVHGCFGIISQLDQELHQATEELHYV 643 7**********************************************877759****************************************9 PP DUF260 98 keel 101 +++l DCAR_006720 644 RAQL 647 9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF53335	6.23E-96	134	520	IPR029063	S-adenosyl-L-methionine-dependent methyltransferase
Pfam	PF02636	1.8E-71	182	443	IPR003788	Putative S-adenosyl-L-methionine-dependent methyltransferase MidA
PROSITE profile	PS50891	21.27	545	647	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.8E-30	546	644	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 797 aa Download sequence Send to blast
MLRRLLLQPQ PSTQRRRILS LYRHCSSSST TSGEAPVSSF VEHLEDDNYD VSKHSSPQSS 60 ATLSIDRSGL YNPPGLSLSL SPPLPLPPPL SSTFLHIYVY VNNIYSGYVY IAEHSHEPSS 120 DSELVKHLKG IIKFRGGPIS IAEYMEEVLT NPKAGFYMNR DVFGEGGDFI TSPDVSQMFG 180 EMVGVWAMCL WEQMGRPSKV NLIELGPGRG TLMADLLRGS SKMKEFTKSL NIHMVECSPA 240 LQKLQYKKLE CIDEDGDDKN VDNHVVSALT GSPISWHTML EQVPTGVPTI IIAHEFYDAL 300 PVHQFQKASR GWCEKMVDVA EDDTFRIVLS PQPTPATLYL LQRCKWAETE DISKLNQIEV 360 CPKAMDLTQN IAKRISSDGG GALIIDYGLN GIVSDSLQAI RKHKFVNILD KPGSADLSAY 420 VDFSAIKHSA EEAADDVSVH GPITQSQFLG SLGINFRVEA LLQNCTEEQA ESLRTGYWRL 480 VGEGEAPFWE GPDDQAPIGM GTRYMAMSIV NKKQGTPAPF QIGLYIYKLF IIQSRRMKLK 540 GGPNKACAAC KFQTRRYHSD CSLSPFFPAD QPKIFNDVHR LFGVSKVIKI LKKMRDHDQK 600 VDAMKSIIFE SYIREKYPVH GCFGIISQLD QELHQATEEL HYVRAQLSML KENNSQSSQI 660 MNSYDVASEN NDNGAFYSDQ SGDQTKSFMN LNSYYSDGMS DDNKLLEIQT QFGDSNTFAL 720 NHSQVGEASD QDYDIMNLYA IDDQSSKEAC ESSSESSCKD GKQQVELVPK NELKSAAAYF 780 SLMSINSDQV THPVVQ*

Sequence ? help Back to Top

Protein Sequence Length: 797 aa Download sequence Send to blast

MLRRLLLQPQ PSTQRRRILS LYRHCSSSST TSGEAPVSSF VEHLEDDNYD VSKHSSPQSS  60
ATLSIDRSGL YNPPGLSLSL SPPLPLPPPL SSTFLHIYVY VNNIYSGYVY IAEHSHEPSS  120
DSELVKHLKG IIKFRGGPIS IAEYMEEVLT NPKAGFYMNR DVFGEGGDFI TSPDVSQMFG  180
EMVGVWAMCL WEQMGRPSKV NLIELGPGRG TLMADLLRGS SKMKEFTKSL NIHMVECSPA  240
LQKLQYKKLE CIDEDGDDKN VDNHVVSALT GSPISWHTML EQVPTGVPTI IIAHEFYDAL  300
PVHQFQKASR GWCEKMVDVA EDDTFRIVLS PQPTPATLYL LQRCKWAETE DISKLNQIEV  360
CPKAMDLTQN IAKRISSDGG GALIIDYGLN GIVSDSLQAI RKHKFVNILD KPGSADLSAY  420
VDFSAIKHSA EEAADDVSVH GPITQSQFLG SLGINFRVEA LLQNCTEEQA ESLRTGYWRL  480
VGEGEAPFWE GPDDQAPIGM GTRYMAMSIV NKKQGTPAPF QIGLYIYKLF IIQSRRMKLK  540
GGPNKACAAC KFQTRRYHSD CSLSPFFPAD QPKIFNDVHR LFGVSKVIKI LKKMRDHDQK  600
VDAMKSIIFE SYIREKYPVH GCFGIISQLD QELHQATEEL HYVRAQLSML KENNSQSSQI  660
MNSYDVASEN NDNGAFYSDQ SGDQTKSFMN LNSYYSDGMS DDNKLLEIQT QFGDSNTFAL  720
NHSQVGEASD QDYDIMNLYA IDDQSSKEAC ESSSESSCKD GKQQVELVPK NELKSAAAYF  780
SLMSINSDQV THPVVQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ztz_A	2e-97	118	520	15	401	Protein arginine methyltransferase NDUFAF7 homolog, mitochondrial
5ztz_B	2e-97	118	520	15	401	Protein arginine methyltransferase NDUFAF7 homolog, mitochondrial
5ztz_C	2e-97	118	520	15	401	Protein arginine methyltransferase NDUFAF7 homolog, mitochondrial
5zu0_A	2e-97	118	520	15	401	Protein arginine methyltransferase NDUFAF7 homolog, mitochondrial
5zu0_B	2e-97	118	520	15	401	Protein arginine methyltransferase NDUFAF7 homolog, mitochondrial
5zu0_C	2e-97	118	520	15	401	Protein arginine methyltransferase NDUFAF7 homolog, mitochondrial
5zzw_A	2e-97	118	520	15	401	Protein arginine methyltransferase NDUFAF7 homolog, mitochondrial
5zzw_B	2e-97	118	520	15	401	Protein arginine methyltransferase NDUFAF7 homolog, mitochondrial
5zzw_C	2e-97	118	520	15	401	Protein arginine methyltransferase NDUFAF7 homolog, mitochondrial
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017231181.1	0.0	PREDICTED: NADH dehydrogenase [ubiquinone] complex I, assembly factor 7
TrEMBL	A0A162AU06	0.0	A0A162AU06_DAUCS; Uncharacterized protein
STRING	XP_009602294.1	0.0	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47870.1	2e-38	LOB domain-containing protein 27

Link Out ? help Back to Top
Phytozome	DCAR_006720