PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_006725
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family HD-ZIP
Protein Properties Length: 222aa    MW: 25557.5 Da    PI: 6.6053
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_006725genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.64.4e-183588356
                 --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                 k+++++ eq+++Le+ Fe  +++  e++ +LA+ lgL+ rq+ +WFqNrRa++k
  DCAR_006725 35 KKRRLNLEQVKALEKSFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWK 88
                 4557899**********************************************9 PP
2HD-ZIP_I/II1345.2e-4334126193
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  ekkrrl+ eqvk+LE+sFe  +kLeperK++lar+Lglqprq+a+WFqnrRAR+ktkqlE+dy+ Lkr++dalk++n++L++e+++L+ el++
  DCAR_006725  34 EKKRRLNLEQVKALEKSFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLERDYDILKRQFDALKADNDSLKSENKKLHGELMA 126
                  69**************************************************************************************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.33E-192692IPR009057Homeodomain-like
PROSITE profilePS5007116.9083090IPR001356Homeobox domain
SMARTSM003898.9E-183394IPR001356Homeobox domain
PfamPF000462.4E-153588IPR001356Homeobox domain
CDDcd000868.27E-163591No hitNo description
Gene3DG3DSA:1.10.10.602.5E-193797IPR009057Homeodomain-like
PRINTSPR000317.5E-66170IPR000047Helix-turn-helix motif
PROSITE patternPS0002706588IPR017970Homeobox, conserved site
PRINTSPR000317.5E-67086IPR000047Helix-turn-helix motif
PfamPF021832.3E-1790130IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MMMGRSMSFT GMERCEEVRG EDEMSDDGSQ SLGEKKRRLN LEQVKALEKS FELGNKLEPE  60
RKMQLARALG LQPRQIAIWF QNRRARWKTK QLERDYDILK RQFDALKADN DSLKSENKKL  120
HGELMALQGR ESGTENRTIN LNKETHEGSW SNGSENSCDH VHTTTGPTQV FLQSSSSTPD  180
LLHSHQRLNP TVPDETFCTM FNGIDDHPGF WPWPEQHQNF H*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18290RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017232161.11e-166PREDICTED: homeobox-leucine zipper protein HAT7-like
SwissprotQ004668e-70HAT7_ARATH; Homeobox-leucine zipper protein HAT7
TrEMBLA0A166DZS01e-164A0A166DZS0_DAUCS; Uncharacterized protein
STRINGPOPTR_0017s11800.13e-92(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8482498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15150.13e-72homeobox 3