PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_006786
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family GRF
Protein Properties Length: 163aa    MW: 18354.1 Da    PI: 9.039
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_006786genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC60.72.3e-1996138142
          WRC   1 daepgrCrRtDGKkWRCsrrv.legkklCErHlhrgrsrsrks 42 
                  ++epgrCrRtDGKkWRC r+v  +++k+C+rHlhrg sr +++
  DCAR_006786  96 EPEPGRCRRTDGKKWRCNRDVaRPDQKYCDRHLHRGGSRLKQQ 138
                  69****************9973689***********9998776 PP
2QLQ46.79.5e-173368237
          QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                 +FT  Ql++Lk Q+l+yKy+ +  PvP++Ll++i+k
  DCAR_006786 33 SFTFLQLEELKDQVLIYKYIENAIPVPHHLLVPICK 68
                 7*********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.5E-63268IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088807.3E-123367IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166617.3463368IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166720.64596141IPR014977WRC domain
PfamPF088792.5E-1697138IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MEPCNPSSKI ARIAEHGRES RICDKGRPRS NCSFTFLQLE ELKDQVLIYK YIENAIPVPH  60
HLLVPICKSV AHSLNGLKGL EFVGGLDCCN YRKNMEPEPG RCRRTDGKKW RCNRDVARPD  120
QKYCDRHLHR GGSRLKQQHN SGGEMLPAKS VSCIPNTTDA LN*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017234574.11e-119PREDICTED: growth-regulating factor 10-like
SwissprotQ6AWX71e-35GRF12_ORYSJ; Growth-regulating factor 12
TrEMBLA0A161XG781e-117A0A161XG78_DAUCS; Uncharacterized protein
STRINGVIT_02s0025g04910.t011e-38(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1447199
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37740.14e-27growth-regulating factor 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]