PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_006845
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB_related
Protein Properties Length: 329aa    MW: 36027.1 Da    PI: 7.5939
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_006845genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.82.2e-1296140347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+  ++ + ++lG+g+W+ I+r    +Rt+ q+ s+ qky
      DCAR_006845  96 PWTEEEHRMFLLGLQKLGKGDWRGISRNYVITRTPTQVASHAQKY 140
                      8*****************************89************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.515320IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129419.79289145IPR017930Myb domain
SuperFamilySSF466891.2E-1691144IPR009057Homeodomain-like
TIGRFAMsTIGR015574.3E-1992144IPR006447Myb domain, plants
SMARTSM007171.1E-1093143IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.3E-1193139IPR009057Homeodomain-like
CDDcd001673.17E-996141No hitNo description
PfamPF002495.7E-1196140IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MTRRCSHCSN NGHNSRTCPN RGVKLFGVRL TDGSSSIRKS VSMGNLSHYA GSSLKNGHDS  60
PGDNLDHGGD VADGYGSEDF VPGSSSSGRE RKKGVPWTEE EHRMFLLGLQ KLGKGDWRGI  120
SRNYVITRTP TQVASHAQKY FIRQCSMSRR KRRSSLFDMI TDEPVETPMV SHDFFSVNTQ  180
EDETQIDPLP APAVEQECEP MESTKSNDVE PSSFQPEISQ YCYPVYYPAY ISSVPTSHPY  240
WSGCSEEPRK IESHVVLKPT AVHSKSPINV NELVGMSKLS LGASIGRDET STLSVKLLEG  300
PSRQSAFQAK PTPANSGMIS GNNAIHAV*
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor that binds to 5'-TATCCA-3' elements in gene promoters. Contributes to the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Transcription repressor involved in a cold stress response pathway that confers cold tolerance. Suppresses the DREB1-dependent signaling pathway under prolonged cold stress. DREB1 responds quickly and transiently while MYBS3 responds slowly to cold stress. They may act sequentially and complementarily for adaptation to short- and long-term cold stress (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by sucrose and gibberellic acid (GA) (PubMed:12172034). Induced by cold stress in roots and shoots. Induced by salt stress in shoots. Down-regulated by abscisic aci (ABA) in shoots (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017231564.10.0PREDICTED: transcription factor MYB1R1-like
SwissprotQ7XC571e-117MYBS3_ORYSJ; Transcription factor MYBS3
TrEMBLA0A166E2P90.0A0A166E2P9_DAUCS; Uncharacterized protein
STRINGXP_006477144.11e-156(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA70622431
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.11e-109MYB_related family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Su CF, et al.
    A novel MYBS3-dependent pathway confers cold tolerance in rice.
    Plant Physiol., 2010. 153(1): p. 145-58
    [PMID:20130099]