PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_006868

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

LBD

Protein Properties

Length: 184aa MW: 20126.3 Da PI: 5.231

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_006868	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	81.2	1.7e-25	23	96	27	100
DUF260 27 pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +++fa+vhk+FGasn +k+l ++p+++r+da+ sl+yeA r++dPvyG+v++i++lqqq+++l+aela+++++ DCAR_006868 23 TSHFAAVHKVFGASNASKILLQIPPHKRHDAVVSLCYEAVSRVSDPVYGCVSHIFTLQQQVDELQAELAYIQAR 96 579******************************************************************99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	13.178	1	97	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.9E-24	23	94	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 184 aa Download sequence Send to blast
MSSRNDDNHM VTVRGEGSDH LGTSHFAAVH KVFGASNASK ILLQIPPHKR HDAVVSLCYE 60 AVSRVSDPVY GCVSHIFTLQ QQVDELQAEL AYIQARLSVI RCRPTVQTPS SIDLQSSLEL 120 QASADIKNSQ QLANSQPELT SSNTASNRNP REDINEEEDD DLQRLARELV AKYLPGLNFG 180 SGD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-22	26	90	40	104	LOB family transfactor Ramosa2.1
5ly0_B	3e-22	26	90	40	104	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017234536.1	1e-117	PREDICTED: LOB domain-containing protein 19-like
TrEMBL	A0A166E392	1e-132	A0A166E392_DAUCS; Uncharacterized protein
STRING	EOX96194	1e-51	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45410.1	2e-40	LOB domain-containing protein 19

Link Out ? help Back to Top
Phytozome	DCAR_006868