PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_006899

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

TCP

Protein Properties

Length: 304aa MW: 32512.6 Da PI: 8.7278

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_006899	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	115.9	5.1e-36	71	170	3	105
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaaksaakskks 100 k+ +++++hTkv+gR+RR+R+s +caar+F+L++eLG+++d++ti WLl+ a+pai+++tgt++ +a ++ s + s + ++ ++ ++s+++sk++ DCAR_006899 71 SKRVSSKDRHTKVEGRGRRIRMSTTCAARVFQLTRELGHKSDGETIRWLLEHAEPAIIAATGTGTVPAIAM---SVNGSLKIPTTPSPSPSDNTSKRR 165 578899*********************************************************88888444...222222222222333333333333 PP TCP 101 qksaa 105 +++a+ DCAR_006899 166 KRPAN 170 33333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.9E-30	75	154	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	26.32	76	130	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 304 aa Download sequence Send to blast
MASLQNQEQH DLNDPTIADK TPLPPPPSMD IQFSSGSELS LVTPKNEYHV DDKLKLGTSE 60 TVQSASSHPQ SKRVSSKDRH TKVEGRGRRI RMSTTCAARV FQLTRELGHK SDGETIRWLL 120 EHAEPAIIAA TGTGTVPAIA MSVNGSLKIP TTPSPSPSDN TSKRRKRPAN SEFVEMESNS 180 TLSAPLMISS TPPLVPMFAI PSNAGPTYWM MNPAASQVPQ LWTLHAAAPL ISVSNSARPI 240 SSLLASMQPV ELKAQSSGAA TGNSDMKNSN TNHSGASSSN ESGKTNFSLE VCDKEELQLM 300 GRK*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00638	PBM	Transfer from Lj0g3v0004489	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017232947.1	0.0	PREDICTED: transcription factor TCP9-like
TrEMBL	A0A166E406	0.0	A0A166E406_DAUCS; Uncharacterized protein
STRING	VIT_15s0048g01150.t01	4e-75	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA248	24	201

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51910.2	8e-55	TCP family protein

Link Out ? help Back to Top
Phytozome	DCAR_006899