PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_006961
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family bZIP
Protein Properties Length: 412aa    MW: 43821.1 Da    PI: 7.3907
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_006961genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1742.1e-23267329163
                  XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                  e++lkrerrkq+NRe+ArrsR+RK+ae eeL+ kv++L+aeN+aLk e+++l+ +++kl++++
  DCAR_006961 267 ERDLKRERRKQSNRESARRSRLRKQAEAEELAIKVDSLTAENMALKAEINRLTVTAEKLTNDN 329
                  799********************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077771.0E-31197IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165966.2E-20116248No hitNo description
Gene3DG3DSA:1.20.5.1701.4E-17261326No hitNo description
SMARTSM003381.6E-21267331IPR004827Basic-leucine zipper domain
PfamPF001704.6E-19267329IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.426269332IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.88E-10270325No hitNo description
CDDcd147026.74E-20272319No hitNo description
PROSITE patternPS000360274289IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0005829Cellular Componentcytosol
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MGNSDDVKAV KPEKLASPPP PPPLDQSNIH VYPDWAAMQA YYGPRVAVPP YFNPAVASGQ  60
APHPYMWGPP QPVMPPYGVP YAALYAHSGV YAHPGVPLAA SPVSMDAHAK SSGTTEHGLM  120
KKLKGLDDLA MSVGNGKADS SDDGMERTLS QSKETEGSSD GSNENSKRAA VNARKRGRDE  180
APIMTGEVKI ETQSSLIPSP RVKSEKVLGI AVATSLVAGK VVGTVVSPSV TSSLELKDSP  240
KEHAVNSPAG GQQPSAMMPN DSWLHNERDL KRERRKQSNR ESARRSRLRK QAEAEELAIK  300
VDSLTAENMA LKAEINRLTV TAEKLTNDNS RLLEVMKNAQ AEHAADVGLG NNNEKKASTL  360
STANLLSRVD NAGCGDRDEG EGEVYEKTTK SGAKLHQLLD ANPRTDAVAA G*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1283289RRSRLRK
2283290RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00318DAPTransfer from AT2G46270Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankX585750.0X58575.1 P.crispum CPRF1 mRNA for light-inducible protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017235987.10.0PREDICTED: common plant regulatory factor 1
SwissprotQ990890.0CPRF1_PETCR; Common plant regulatory factor 1
TrEMBLA0A166E5L10.0A0A166E5L1_DAUCS; Uncharacterized protein
STRINGcassava4.1_008459m1e-151(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31132447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46270.12e-83G-box binding factor 3
Publications ? help Back to Top
  1. Weisshaar B,Armstrong GA,Block A,da Costa e Silva O,Hahlbrock K
    Light-inducible and constitutively expressed DNA-binding proteins recognizing a plant promoter element with functional relevance in light responsiveness.
    EMBO J., 1991. 10(7): p. 1777-86
    [PMID:2050115]
  2. Feldbrügge M,Hahlbrock K,Weisshaar B
    The transcriptional regulator CPRF1: expression analysis and gene structure.
    Mol. Gen. Genet., 1996. 251(6): p. 619-27
    [PMID:8757392]