PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_006988
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family bHLH
Protein Properties Length: 355aa    MW: 38974.2 Da    PI: 5.7422
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_006988genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.62.3e-13177222454
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  +h e+Er+RR+++Ns+f  Lr ++P+       K++Ka+ L  Av YI++L
  DCAR_006988 177 NHVEAERQRREKLNSKFYALRAVVPNV-----SKMDKASLLGDAVSYINDL 222
                  799***********************6.....5****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.5E-20497IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000831.81E-15172227No hitNo description
SuperFamilySSF474596.54E-19172244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.473173222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.1E-11177222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.8E-17177233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-16179228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MESSDVDGND PEWFYLNSIS RSISAGGAAA KAFTSGNYVW LDGYQELGSC ECERAREALI  60
HGVRTMICFP TAHGVVEMGS SSRINQDLIL VEKIKSLIAI STTPGLVQEQ PQDKGLLLDV  120
YTNNVKKLDN HPEKLQTPKI EIISFANTNR NDNIVKIQKV GKKRGRKPSV GKDRPINHVE  180
AERQRREKLN SKFYALRAVV PNVSKMDKAS LLGDAVSYIN DLKTKLEDLE SHKNSPPPPP  240
PPPQLNACST STSAVSDVDE ATTMSTDDDE VEVKLVGTDA MIRVRCKNNN YPGAKLMDAL  300
RELELEVNHA SMSSFDQLML IDVVIKVPSE GCLRSEDALR EAIVSSLSTQ PPNI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-27170233164Transcription factor MYC2
5gnj_B1e-27170233164Transcription factor MYC2
5gnj_E1e-27170233164Transcription factor MYC2
5gnj_F1e-27170233164Transcription factor MYC2
5gnj_G1e-27170233164Transcription factor MYC2
5gnj_I1e-27170233164Transcription factor MYC2
5gnj_M1e-27170233164Transcription factor MYC2
5gnj_N1e-27170233164Transcription factor MYC2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017232827.10.0PREDICTED: transcription factor MYC2-like
TrEMBLA0A166E6900.0A0A166E690_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10722185
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46760.16e-54bHLH family protein