PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_006999
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family CAMTA
Protein Properties Length: 961aa    MW: 107328 Da    PI: 6.5599
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_006999genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-11673.2e-52121263116
         CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcy 99 
                  +e + rwlk+ e++ iL+n++ h+lt ++++rp+sgsl+L+n++++r+frkDG+sw++k+dg+t+ E+he+LKvg+ e+l+cyYah++ np+fqrr+y
  DCAR_006999  12 QEaQVRWLKPPEVLFILQNHKDHQLTDKPPQRPSSGSLFLFNKRVLRFFRKDGHSWRRKRDGRTISEAHERLKVGNAEALNCYYAHGDLNPNFQRRSY 109
                  56599********************************************************************************************* PP

         CG-1 100 wlLeeelekivlvhyle 116
                  w+L+  +e+ivlvhy++
  DCAR_006999 110 WMLDPGFEHIVLVHYRD 126
                  ***************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143776.5597133IPR005559CG-1 DNA-binding domain
SMARTSM010762.4E-7510128IPR005559CG-1 DNA-binding domain
PfamPF038592.0E-4613126IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.101.2E-7396483IPR013783Immunoglobulin-like fold
CDDcd001028.62E-4399483No hitNo description
SuperFamilySSF812969.49E-17400483IPR014756Immunoglobulin E-set
PfamPF018333.5E-7400476IPR002909IPT domain
Gene3DG3DSA:1.25.40.201.6E-15595690IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029716.096597689IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484033.11E-15600691IPR020683Ankyrin repeat-containing domain
CDDcd002049.89E-14602689No hitNo description
PfamPF127962.3E-8612690IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008811.114630662IPR002110Ankyrin repeat
SMARTSM002484.9E-4630659IPR002110Ankyrin repeat
SMARTSM002481600669698IPR002110Ankyrin repeat
SMARTSM0001515747769IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.492748777IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525406.11E-7797857IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.25805827IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.638806835IPR000048IQ motif, EF-hand binding site
PfamPF006120.02808826IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0078828850IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.157829853IPR000048IQ motif, EF-hand binding site
PfamPF006122.4E-5830850IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 961 aa     Download sequence    Send to blast
MQSGYDLSQL IQEAQVRWLK PPEVLFILQN HKDHQLTDKP PQRPSSGSLF LFNKRVLRFF  60
RKDGHSWRRK RDGRTISEAH ERLKVGNAEA LNCYYAHGDL NPNFQRRSYW MLDPGFEHIV  120
LVHYRDITEG RHNGDSVLQL SPESYATLSH VPSSNTTQFA GSTDVISDLH DPYHSASSPG  180
SMEVSSNAII KSDSMNYFDM RKSTEELNTS PNLEINKALR RLEEQLSLND DSVEQMGLSY  240
PGHEDSKNIG HAVCYQSLPQ SAVMQDDLNS LMLQQCSGEK NKEHYYQQFG DGFSINEEAA  300
AWNGMLDCFT DSAGVGQGHK HVKISNGNNF VSIVSDNFIM LPASNVLSQE AETFRFSAPP  360
HAMNYYEANP YQEMFQQDQI GVPLQATPSS TISINYKFTL HEISPDWGYA NETTKVIIIG  420
SFVCDPSDHG LTCKFGDIEV PIEIIQEGVI RCHAPPNLPG KVTLCITSGN HESCSEFREF  480
EYRVNPSSWH QSNVPKTEKS TNLEELLLLV RLVQMLLSDS PVQKIENSRS DICLLDKVKA  540
GEESWTQVIE ALLVGTWTSS STKDWLLEEL LKEKMCHWLS SRLLEGSDHA QCFLSKKEQG  600
IIHMVSGLGF EWALNAILDA GVSVDFRDIN GWTALHWAAR FGREKMVAEL LASGASAGAL  660
TDPYSQDPTG KTPASIAASC GHKGLAGYLS EVSLTSHLSS LTMAESEQSK NSAEVETERT  720
LDSLSNTNLT AVDHQLPLKQ TLAAVRNASQ AAARIQSAFR AHSFRKRQAA STTATDDSGD  780
AYSLLSHDVY GLSAASKLAF RNTRDTNAAA LSIQKKYRGW KGRKDFLAYR KKVVKIQAHV  840
RGHQVRKNYK VICWAVGVLE KVVLRWRRRR SGLRGFRPEA GSIDEVEDED IVKVFRKQKV  900
DVAIDEALLR VRSMVNSEEA REQYHRMLEK YGQAKAKLEG STSEASTSSE ISNMENDGGI  960
*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017235766.10.0PREDICTED: calmodulin-binding transcription activator 4-like
SwissprotQ9FYG20.0CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBLA0A166E6L10.0A0A166E6L1_DAUCS; Uncharacterized protein
STRINGXP_009781561.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA39322037
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.11e-177Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]