PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_007074

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

YABBY

Protein Properties

Length: 220aa MW: 24395.7 Da PI: 7.3106

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_007074	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	204.1	5.5e-63	8	170	4	167
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas....qllaaeshldeslkeelleelkveeenlksnvekeesastsvs 97 f+ +q+Cyv+C++C+til+vsvP++sl++vvtv+CGhCtsllsvn+ as +l ++ sh d+ + e+++e+e + + ++ +++++++ s DCAR_007074 8 FDLQDQICYVHCGYCTTILLVSVPHSSLSMVVTVKCGHCTSLLSVNMLRASfaplHLSPSLSHSDH------HPEQEMEKEIFPEITKDSQKEMNNSS 99 7889****************************************99888656566666666333......33444444445444444444443333 PP YABBY 98 sekl..senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkih 167 + +e+ d + ++rPPekr r+Psaynrfik+ei+r+ka+nP+++h++afs+aaknWahfP+ DCAR_007074 100 P-VIssDEEGDYVFSSNLVINRPPEKRPRAPSAYNRFIKDEIRRLKAKNPNMAHKQAFSTAAKNWAHFPPSL 170 3.231144555666666779***********************************************865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	1.1E-59	11	168	IPR006780	YABBY protein
SuperFamily	SSF47095	4.71E-8	119	169	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	6.1E-6	122	202	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:0048481	Biological Process	plant ovule development
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 220 aa Download sequence Send to blast
MSTVNQGFDL QDQICYVHCG YCTTILLVSV PHSSLSMVVT VKCGHCTSLL SVNMLRASFA 60 PLHLSPSLSH SDHHPEQEME KEIFPEITKD SQKEMNNSSP VISSDEEGDY VFSSNLVINR 120 PPEKRPRAPS AYNRFIKDEI RRLKAKNPNM AHKQAFSTAA KNWAHFPPSL NKLGDEDAAA 180 GNKTHFHARL SAFLFMKPDS NNACCFSTQE LVSTLMLVA*

Functional Description ? help Back to Top
Source	Description
UniProt	Essential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269\|PubMed:10601041, ECO:0000269\|PubMed:12183380, ECO:0000269\|PubMed:9093862, ECO:0000269\|PubMed:9118807}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269\|PubMed:10601041, ECO:0000269\|PubMed:12183380, ECO:0000269\|PubMed:12183381}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017234184.1	1e-141	PREDICTED: axial regulator YABBY 4 isoform X2
Swissprot	Q9LDT3	4e-62	YAB4_ARATH; Axial regulator YABBY 4
TrEMBL	A0A166E8M3	1e-163	A0A166E8M3_DAUCS; Uncharacterized protein
STRING	XP_006483897.1	9e-71	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA381	24	163

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G23420.1	3e-62	YABBY family protein

Link Out ? help Back to Top
Phytozome	DCAR_007074

Publications ? help Back to Top
Lora J,Hormaza JI,Herrero M Transition from two to one integument in Prunus species: expression pattern of INNER NO OUTER (INO), ABERRANT TESTA SHAPE (ATS) and ETTIN (ETT). New Phytol., 2015. 208(2): p. 584-95 [PMID:25991552] Skinner DJ,Brown RH,Kuzoff RK,Gasser CS Conservation of the role of INNER NO OUTER in development of unitegmic ovules of the Solanaceae despite a divergence in protein function. BMC Plant Biol., 2016. 16(1): p. 143 [PMID:27350128] Simon MK,Skinner DJ,Gallagher TL,Gasser CS Integument Development in Arabidopsis Depends on Interaction of YABBY Protein INNER NO OUTER with Coactivators and Corepressors. Genetics, 2017. 207(4): p. 1489-1500 [PMID:28971961]