PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_007086

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

bHLH

Protein Properties

Length: 488aa MW: 54595.1 Da PI: 6.7271

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_007086	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.7	3.7e-12	302	345	7	55
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 + Er+RR ri++++++Lr l+P+ + K++ a+iL A++YIk+L+ DCAR_007086 302 ITERNRRTRIKEGLFTLRALVPNiS------KMDRAAILGDAIDYIKELE 345 68*******************66......**************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	1.4E-15	13	157	IPR025610	Transcription factor MYC/MYB N-terminal
SuperFamily	SSF47459	2.36E-15	288	358	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.243	295	344	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.80E-12	298	346	No hit	No description
SMART	SM00353	4.8E-13	301	350	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.9E-10	302	345	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.9E-15	302	360	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 488 aa Download sequence Send to blast
MIVGALERAV EWLRPLVKTQ EWEYCVIWKL GDDPSRFIEF VNCCCGGGDG VNECDGIVKE 60 EGGGDGLCRD YNFQHRIGSD ACVKLAQYPF SLPLYSGIHG EVAMSNQPRW LSYGSTTDLN 120 NETVGTQVLI PVTGGLIELF SKQNVPCDQK LIELITAYYN VSVKQEIMSA HSHNDKSLLE 180 KLHKHPFVVE QLNDQCHFNS MSRLQSLVTG SQASPYGIEG SSAGSTPSNE YLLLQSGSSH 240 VSPNLSPIKS IGNPTKSWKR KLNEEMPKDE VARVANHVFD KKDKVKGKQK TGKEQYYSKN 300 LITERNRRTR IKEGLFTLRA LVPNISKMDR AAILGDAIDY IKELENTARN CQAELKEMEE 360 DGCSKDNGAS EILELKGSYE DNKRSLANET LQGSAVADQN QPIQQMPVEI EVNQISQKDI 420 WLKVVHSQKR DGFLRLMKTV HSLGLQVIDA NVTTCKGRVL NIFKIEATQK EFEPQKLKDL 480 LLTNWTL*

Sequence ? help Back to Top

Protein Sequence Length: 488 aa Download sequence Send to blast

MIVGALERAV EWLRPLVKTQ EWEYCVIWKL GDDPSRFIEF VNCCCGGGDG VNECDGIVKE  60
EGGGDGLCRD YNFQHRIGSD ACVKLAQYPF SLPLYSGIHG EVAMSNQPRW LSYGSTTDLN  120
NETVGTQVLI PVTGGLIELF SKQNVPCDQK LIELITAYYN VSVKQEIMSA HSHNDKSLLE  180
KLHKHPFVVE QLNDQCHFNS MSRLQSLVTG SQASPYGIEG SSAGSTPSNE YLLLQSGSSH  240
VSPNLSPIKS IGNPTKSWKR KLNEEMPKDE VARVANHVFD KKDKVKGKQK TGKEQYYSKN  300
LITERNRRTR IKEGLFTLRA LVPNISKMDR AAILGDAIDY IKELENTARN CQAELKEMEE  360
DGCSKDNGAS EILELKGSYE DNKRSLANET LQGSAVADQN QPIQQMPVEI EVNQISQKDI  420
WLKVVHSQKR DGFLRLMKTV HSLGLQVIDA NVTTCKGRVL NIFKIEATQK EFEPQKLKDL  480
LLTNWTL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017232580.1	0.0	PREDICTED: transcription factor bHLH90-like
TrEMBL	A0A161XGX8	0.0	A0A161XGX8_DAUCS; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9929	22	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16910.1	7e-58	bHLH family protein

Link Out ? help Back to Top
Phytozome	DCAR_007086