PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_007143
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family bHLH
Protein Properties Length: 96aa    MW: 10293.6 Da    PI: 9.5682
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_007143genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.81.4e-0621621554
                 HHHHHHHHHHCTSCC.C....TTS-STCHHHHHHHHHHHHHH CS
          HLH 15 riNsafeeLrellPk.as.kapskKlsKaeiLekAveYIksL 54
                 +i +  ++L++l+P+ a   ++s  +s + +L++++e+I++L
  DCAR_007143 21 QIADLVSKLQQLIPEiANrPTGSAQVSASKVLQETCEHIRNL 62
                 6888899********9987788888***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.293662IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-72166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.64E-72186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 96 aa     Download sequence    Send to blast
MSSRRSRSGQ SSGASRISDA QIADLVSKLQ QLIPEIANRP TGSAQVSASK VLQETCEHIR  60
NLRKEVSDLS DRLSQLLESI DSNSAQAAVI RSLLM*
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017234187.11e-59PREDICTED: transcription factor PRE6-like
SwissprotQ9LJX16e-34PRE5_ARATH; Transcription factor PRE5
TrEMBLA0A166EAJ12e-58A0A166EAJ1_DAUCS; Uncharacterized protein
STRINGPGSC0003DMT4000177482e-34(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA35324161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26945.12e-30bHLH family protein