PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_007211
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family bHLH
Protein Properties Length: 477aa    MW: 50915.9 Da    PI: 5.0091
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_007211genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.82.1e-09334382355
                  HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  DCAR_007211 334 NSHSLAERVRREKISERMKYLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 382
                  58*************************9....556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.01E-10329386No hitNo description
SuperFamilySSF474593.79E-17329398IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.516331381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-17332398IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-6334382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-10337387IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MDKFEMNNGD EELRDYSSSE MPLSLRFSRG GSKESIDADN KIAICREGLL ESSSCSAASN  60
VDSLCPIVSD QLITSQKFGF CGIDVLSNMG SFNASGMGGT VDMDWTPPIP VLGGNISLGS  120
SSSMLTLPGS SSHIPTDLGF IERGAMFPCF SGGNFGEMLN SVTIPGFMSQ YTREVAPMHG  180
LRVINSDVRL NSISNLEVQE NESNVLEGAK EVLISFEHGP GGKDPDSGKK TESFVRPHDE  240
ANEGPCESGS ESVDAEYSTG ANQAEPSQLD GTGQGFLAKG HGSKKRRKIA QGDQNPASAA  300
TKPSGKHGKL VPQPSESLKQ EYVHVRARRG QATNSHSLAE RVRREKISER MKYLQDLVPG  360
CSKVTGKAVM LDEIINYVQS LQQQVEFLSM KLASVNTQLD IDIERTAGKD ILQTAGPSSG  420
LGFYTDMSMH VSQPGTIQAG LLGMGTFPNA LNRTISSHMA ISGGNTDSTS QVPDVW*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1283287KKRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017231749.10.0PREDICTED: transcription factor bHLH76-like
TrEMBLA0A166ECC60.0A0A166ECC6_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28712150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.23e-60bHLH family protein