PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_007218
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB
Protein Properties Length: 266aa    MW: 30736.4 Da    PI: 6.3429
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_007218genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.43.9e-141462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT++Ed++l d ++   ++ +W+++++  g+ R++k+c++rw +yl
      DCAR_007218 14 KGPWTADEDQKLRDFIHANDTKyCWRAVPKLAGLLRCGKSCRLRWANYL 62
                     79*******************************99************97 PP
2Myb_DNA-binding39.91e-1272112547
                      -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++ E++l +++  q+G++ W+ Ia++++ gRt++ +k++w+++
      DCAR_007218  72 SKKEEKLVIHLRSQFGNK-WSQIASHLP-GRTDNYIKNYWHNH 112
                      789***************.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.2E-17665IPR009057Homeodomain-like
PROSITE profilePS5129411.213962IPR017930Myb domain
SuperFamilySSF466897.59E-2411109IPR009057Homeodomain-like
SMARTSM007171.1E-91364IPR001005SANT/Myb domain
PfamPF002493.8E-131462IPR001005SANT/Myb domain
CDDcd001671.69E-61662No hitNo description
PROSITE profilePS5129421.09463117IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-2066118IPR009057Homeodomain-like
SMARTSM007174.2E-1167115IPR001005SANT/Myb domain
PfamPF002493.1E-1172112IPR001005SANT/Myb domain
CDDcd001672.41E-872113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MGRRACCEKI GLKKGPWTAD EDQKLRDFIH ANDTKYCWRA VPKLAGLLRC GKSCRLRWAN  60
YLRPDLKTDT LSKKEEKLVI HLRSQFGNKW SQIASHLPGR TDNYIKNYWH NHIKKRLNQI  120
DSKAHKPRFP DQPATTSTHY NTCQKRAEKR REDMDAVCED DMAKENLTID SGFSVDEIPL  180
IEDHEIINPH SLHLPSNDCS TSSIPYPCTA LTATKVENVK SSAYWQGNDE CNNYDGNMGV  240
YYSCEDDFTD WDWLLNDFDI DEEID*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-23121185109B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as positive regulator of abscisic acid (ABA) signaling in response to salt stress. Acts as negative regulator ABI1, ABI2 and PP2CA, which are protein phosphatases 2C acting as negative regulator of ABA signaling. Binds to the DNA specific sequence and core element 5'-ACGT-3' found in the promoters of ABI1 and PP2CA to negatively regulate their expression during ABA-dependent salt stress response. {ECO:0000269|PubMed:23660402}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress, drought stress and abscisic acid (ABA). Down-regulated by salicylic acid (SA) methyl jasmonate (JA). {ECO:0000269|PubMed:23660402}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017234479.10.0PREDICTED: protein ODORANT1-like
SwissprotQ9C7U73e-59MYB20_ARATH; Transcription factor MYB20
TrEMBLA0A166ECI10.0A0A166ECI1_DAUCS; Uncharacterized protein
STRINGGorai.008G060100.15e-66(Gossypium raimondii)
STRINGGSMUA_Achr10P29970_0016e-67(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16600.15e-62myb domain protein 43
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]