PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_007337
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family C2H2
Protein Properties Length: 211aa    MW: 24007.6 Da    PI: 9.5347
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_007337genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.000123557123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 y C+ C+k F++   L  H+++H
  DCAR_007337 35 YNCTFCKKEFRSAQALGGHMNVH 57
                 89*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.5E-53260IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.99E-73262No hitNo description
PROSITE profilePS5015711.3023562IPR007087Zinc finger, C2H2
SMARTSM003550.00613557IPR015880Zinc finger, C2H2-like
PfamPF139122.4E-73558IPR007087Zinc finger, C2H2
PROSITE patternPS0002803757IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MNLSGRDKFK GRWDGTNFSF ERDRSYGFSW PQRNYNCTFC KKEFRSAQAL GGHMNVHRRD  60
RARQLTQHSS SSSSSEINTA PHLHSNPNPK PNLNHDHKLL FPSPSTRTSS PKAPATRFLT  120
YTGRARDFDD NVVLDQDVSP QIMEIRKKLA VEVNNRNEVR GVVKQDQKDE ARVHNKENDH  180
ELLGLDLNMA ISTGRDGSED LDLELRLGSF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A2e-113057229superman protein
2l1o_A2e-113057229Transcriptional regulator SUPERMAN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017234563.11e-157PREDICTED: transcriptional regulator SUPERMAN-like
TrEMBLA0A166EFM91e-155A0A166EFM9_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21102453
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23130.17e-22C2H2 family protein