PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_007343
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family WRKY
Protein Properties Length: 371aa    MW: 41396.5 Da    PI: 9.935
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_007343genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY33.49.3e-11278305330
                  -SS-EEEEEEE--TT-SS-EEEEEE-ST CS
         WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa 30 
                  D+y+WrKYGqK++kgs++p s   C + 
  DCAR_007343 278 DEYSWRKYGQKPIKGSPHPSSSSSCETL 305
                  9******************998888655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105336.5E-17230274IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.803.4E-10264309IPR003657WRKY domain
PROSITE profilePS5081113.758271309IPR003657WRKY domain
SuperFamilySSF1182903.4E-8275311IPR003657WRKY domain
SMARTSM007740.002276315IPR003657WRKY domain
PfamPF031061.8E-7278310IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MEIEEVNKTA IESCHRVLSL ISKPKDQIQY RNLAMETGEA VSKFKKVVSI LNASVGHARV  60
RKAKNIQIPF PQSMLLDNPI TRNDYQPKAL QLLPTNAHEI SIPDMGSNVK SNFTFGNMPL  120
ELSSNGKAPV QIVQQTPPPS NYQFHLQQQQ KFQFQQQHLK QQSEMIFRKS NSASGINLNF  180
DSSTCTPSMS STRSFMSSLS VDGSVANLDG NAFRLIGGTR SLDQSSYQHK RRCSAREDGS  240
VKCGSSGRCH CSKKRKHRIK RSIKVPAISN KLADIPVDEY SWRKYGQKPI KGSPHPSSSS  300
SCETLEIGCF YFEIMTKVVM QLLQANACGD VIRSVKIVAS TQQPVYHQSC KASLLLYTIC  360
ICYFTLSFWV *
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017231145.10.0PREDICTED: probable WRKY transcription factor 21
SwissprotO043362e-83WRK21_ARATH; Probable WRKY transcription factor 21
TrEMBLA0A166EFW50.0A0A166EFW5_DAUCS; Uncharacterized protein
STRINGXP_009618397.11e-132(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32712350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.13e-57WRKY DNA-binding protein 21