PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_007428
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family C2H2
Protein Properties Length: 277aa    MW: 30511.6 Da    PI: 7.0546
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_007428genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.00013103125123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  y+C+ C++ Fs+   L  H++ H
  DCAR_007428 103 YECNFCKRGFSNAQALGGHMNIH 125
                  99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.17E-7100130No hitNo description
Gene3DG3DSA:3.30.160.605.4E-5101129IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.614103130IPR007087Zinc finger, C2H2
PROSITE patternPS000280105125IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MNSPLLTASK FGYYSRHLGA IANQVNCKVG RAQSSGSSHW GHCRNLAWII SHLDLAAISA  60
SLMELNKSSS PEKSDPAVAA TTTNDEQCSS PPQAQAQAQP RTYECNFCKR GFSNAQALGG  120
HMNIHRKDKA KLKQTSPIPE SRSQQFLEIP KTALSPATNL VINPTRSTFP ERRDAVAANW  180
TWNYSSENRD TASIMRSDQG YVGEPKQLPL FNEATTLRVV DDHQDQKQSY DKELSSSSSH  240
GDHDEDHDEL DLELRLGQDP SLDSSSSTAK STRKFF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017233623.11e-158PREDICTED: transcriptional regulator TAC1-like
TrEMBLA0A166EHU90.0A0A166EHU9_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21362152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53820.13e-15C2H2 family protein