PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_007468

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

C2H2

Protein Properties

Length: 253aa MW: 28752.1 Da PI: 8.9145

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_007468	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.5	4.8e-05	56	79	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C++C+ksF++ +L +H + H DCAR_007468 56 WRCGYCKKSFRSEKYLDQHFDNrH 79 58*****************77666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.058	56	81	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	58	79	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence Send to blast
MQLQGFIKTM TGMLMKCIVP EKEAGLLGRS LRRLHPDNDI YRDQEQHKIH VDINEWRCGY 60 CKKSFRSEKY LDQHFDNRHS NLLNISHSKC LADLCGALHC DLVTDFKAKK NKCNPSASAR 120 NKHLCEGLAD KCFPINQGPS ANRLHELFLR QFCDAHTCSG GHKPFSRGSK KHTSIFYLVI 180 SILTSLLVAI FYIVVYVYRR TAKDLNASHD GDKSQNHHSA SFSGVHQVTC KIENSDHEDL 240 IVMKLKKILE TP*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017231415.1	1e-123	PREDICTED: uncharacterized protein LOC108205832
Refseq	XP_017231416.1	1e-123	PREDICTED: uncharacterized protein LOC108205832
TrEMBL	A0A166EJ25	0.0	A0A166EJ25_DAUCS; Uncharacterized protein
STRING	XP_009616977.1	1e-99	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8084	12	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63280.1	1e-82	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	DCAR_007468