PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_007494

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

NF-YC

Protein Properties

Length: 188aa MW: 21316.5 Da PI: 4.6231

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_007494	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	125.5	2.1e-39	26	124	1	95
NF-YC 1 qlksfwekq...ie.katdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvd 94 ql ++w+kq ++ +++dfk+he+Pl+rikki+k+d+dv+m+++eaPvll+kace+fi elt++sw ae++ rrtl+k+di +a++ td ++fl d DCAR_007494 26 QLDHYWNKQrqqMDvTDHDFKKHEFPLSRIKKIMKFDQDVEMVATEAPVLLAKACEFFIQELTIKSWPPAEHSGRRTLRKNDIVEAINGTDSYKFLFD 123 7899**94443323579***************************************************************************99 PP NF-YC 95 i 95 DCAR_007494 124 Y 124 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	1.34E-25	12	122	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	1.4E-28	42	112	IPR009072	Histone-fold
Pfam	PF00808	1.9E-18	49	112	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 188 aa Download sequence Send to blast
MASNNPPTPP QQVNEVNTIA QQQKYQLDHY WNKQRQQMDV TDHDFKKHEF PLSRIKKIMK 60 FDQDVEMVAT EAPVLLAKAC EFFIQELTIK SWPPAEHSGR RTLRKNDIVE AINGTDSYKF 120 LFDYRHDGPA AGGSSSMFSS HADPEPVASS SSVPPPVQTW IRNGHDENEM NVDDENENED 180 EMIDAAN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	2e-28	44	123	12	91	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Involved in the abscisic acid (ABA) signaling pathway. {ECO:0000250, ECO:0000269\|PubMed:17322342}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017233629.1	1e-140	PREDICTED: nuclear transcription factor Y subunit C-1-like
Swissprot	Q9FMV5	2e-32	NFYC4_ARATH; Nuclear transcription factor Y subunit C-4
TrEMBL	A0A166EJT6	1e-138	A0A166EJT6_DAUCS; Uncharacterized protein
STRING	XP_003061605.1	5e-33	(Micromonas pusilla)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48590.1	2e-34	nuclear factor Y, subunit C1

Link Out ? help Back to Top
Phytozome	DCAR_007494

Publications ? help Back to Top
Hwang YH, et al. Functional conservation of rice OsNF-YB/YC and Arabidopsis AtNF-YB/YC proteins in the regulation of flowering time. Plant Cell Rep., 2016. 35(4): p. 857-65 [PMID:26754793] Liu X, et al. The NF-YC-RGL2 module integrates GA and ABA signalling to regulate seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 12768 [PMID:27624486] Myers ZA, et al. NUCLEAR FACTOR Y, Subunit C (NF-YC) Transcription Factors Are Positive Regulators of Photomorphogenesis in Arabidopsis thaliana. PLoS Genet., 2016. 12(9): p. e1006333 [PMID:27685091] Tang Y, et al. Arabidopsis NF-YCs Mediate the Light-Controlled Hypocotyl Elongation via Modulating Histone Acetylation. Mol Plant, 2017. 10(2): p. 260-273 [PMID:27876642] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722] Qi M, et al. QQS orphan gene and its interactor NF-YC4 reduce susceptibility to pathogens and pests. Plant Biotechnol. J., 2019. 17(1): p. 252-263 [PMID:29878511]