PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_007495
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family NF-YC
Protein Properties Length: 700aa    MW: 76433.3 Da    PI: 5.7587
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_007495genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC26.71.2e-085215544780
        NF-YC  47 lskacelfileltlrswlhaeenkrrtlkksdia 80 
                  l+kace++i +lt++swl+ae++ rr l k +  
  DCAR_007495 521 LAKACEFYIQQLTIKSWLRAEHCGRRNLGKMNQR 554
                  79*************************9887654 PP
2NF-YC103.41.6e-32568668296
        NF-YC   2 lksfwekqiek.....atdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaav.trtdifdflv 93 
                  l  +w++q+++     ++++++ ++Plarikki++ad dvkmisae+P ++skace+f+ elt++sw +ae   rrtl+k dia+a+ ++ + ++fl 
  DCAR_007495 568 LDRYWNYQMQQimgatEAEVRKPAIPLARIKKIMRADADVKMISAEVPLIFSKACEFFVQELTIKSWPRAEYHGRRTLRKEDIAEALgSEPMCYEFLF 665
                  5689**997652222246889999*************************************************************99346789***** PP

        NF-YC  94 div 96 
                  d v
  DCAR_007495 666 DSV 668
                  *97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575128No hitNo description
SuperFamilySSF1034731.01E-97197IPR020846Major facilitator superfamily domain
Gene3DG3DSA:1.20.1250.208.7E-1014205No hitNo description
PfamPF068137.6E-8215262IPR010658Nodulin-like
SuperFamilySSF1034731.7E-16209276IPR020846Major facilitator superfamily domain
SuperFamilySSF1034731.7E-16328498IPR020846Major facilitator superfamily domain
Gene3DG3DSA:1.20.1250.202.5E-11342494No hitNo description
CDDcd061741.28E-6347494IPR020846Major facilitator superfamily domain
SuperFamilySSF471136.54E-22561656IPR009072Histone-fold
Gene3DG3DSA:1.10.20.102.4E-25587653IPR009072Histone-fold
PfamPF008083.9E-16592654IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 700 aa     Download sequence    Send to blast
MVESGLKLRE FLDNRWLVFV ASMWVQSCSG IGYLFGSLSP IIKKTMGYNQ RQIAILGIAK  60
DLGDAIGYVA GTLSEILPIW AVLAIGVVQN FVGYGLVGLI VSQILPTAPL WVLCILIFVG  120
TNGETYFNTG SLVTCIQNFP EYRGPIVGIL KGFAGLSGAI MTQIYIMINL PNEAALIFVV  180
AVGPSMVITA LMFILKPVGG QRQVRPSDNA NFAFVYSVCL VLAAYLLGVL LLQDLVNLNE  240
NIITVMSVGL IFIILLPIVI PVLLVFTSKP ISSAEESLLP APESQPSISS EQSQTKDMGA  300
SEIDSLLEVE RQKRIIHSAG AVSVHQKKAP SIGEDFTLTQ AFKTADFWLV FISLVLASGS  360
GMTVIDNLGQ MSQSLGYENT HVFVSMISIW NFLGRVAGGY FSEIVVRKYA YPRPVAMAVV  420
QVLMAIALCF YSLGLPGAIY VVSVLMGLGY GAHWAIVPAA ASELFGLKSF GALYNFLTLS  480
SPAGSLFFSG VIAAGIYDSE AKKQASIIPS QNLEHMLRMP LAKACEFYIQ QLTIKSWLRA  540
EHCGRRNLGK MNQRNPFNAM AQQQKYLLDR YWNYQMQQIM GATEAEVRKP AIPLARIKKI  600
MRADADVKMI SAEVPLIFSK ACEFFVQELT IKSWPRAEYH GRRTLRKEDI AEALGSEPMC  660
YEFLFDSVGI PREGGDENEM NDGDGGLGDE MDVDDGAAN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_C1e-2256767218119HapE
4g92_C1e-2256767218119HapE
5g49_B1e-22575672395NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017231089.10.0PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like
RefseqXP_017231090.10.0PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like
TrEMBLA0A166EJU60.0A0A166EJU6_DAUCS; Uncharacterized protein
STRINGcassava4.1_004211m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.27e-27nuclear factor Y, subunit C2