PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_007501
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family SBP
Protein Properties Length: 361aa    MW: 39831 Da    PI: 8.4134
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_007501genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP90.12.5e-2885154178
                  --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
          SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                  +C v+gC+adls+++eyhrrhkvCe+hsk+p+v ++g +qrfCqqCsr          krsCr+rL++hn+rrrk+q+
  DCAR_007501  85 MCLVDGCNADLSNCREYHRRHKVCEAHSKTPEVKINGNKQRFCQQCSR--------GXKRSCRKRLDGHNRRRRKPQP 154
                  6**********************************************9........68*****************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.4E-2281138IPR004333Transcription factor, SBP-box
PROSITE profilePS5114124.69283152IPR004333Transcription factor, SBP-box
SuperFamilySSF1036124.32E-2984157IPR004333Transcription factor, SBP-box
PfamPF031101.6E-2086151IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MDWNLKTPSW DYNAYEQETI PNIGDVGGSN SYLGQGTRGD FSVDSKLGNL VEGDSVTVPK  60
MMLSPSGSSK RARPRQLNNG VHTAMCLVDG CNADLSNCRE YHRRHKVCEA HSKTPEVKIN  120
GNKQRFCQQC SRGXKRSCRK RLDGHNRRRR KPQPEPLSHS GSFFPGHQGT RMFQFYTPQA  180
DSSTPMTNPI WAGMVKTEED NKLYNHHSHS SLPEYSLSLD KREKQHSFMN NTNLVLSNQS  240
AAEPSVCQPL LNNIASSASG GTSSRMYYDG FSTRVVHSDC ALSLLSSSST HTNNMGSGLA  300
LQPNSIPGAH PLDSGLHYNN QGQMLVPNVG DADVNCLEMF QAPNASRGNN SPQTLPFYWE  360
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-19851511084squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1134151KRSCRKRLDGHNRRRRKP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00555DAPTransfer from AT5G50570Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017232142.10.0PREDICTED: squamosa promoter-binding-like protein 13A
TrEMBLA0A166EJY80.0A0A166EJY8_DAUCS; Uncharacterized protein
STRINGXP_010250660.11e-110(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49202037
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.18e-42SBP family protein