PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_007526
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family M-type_MADS
Protein Properties Length: 248aa    MW: 28194.2 Da    PI: 8.125
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_007526genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF43.73.5e-14955450
                 -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
       SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                 e ks + +++ +R++ i KK  EL +LC+++++ ++f+ +g++  ++
  DCAR_007526  9 EQKSLKRTSYNNRKECIKKKTMELATLCGIDACTVMFGVDGEIESWP 55
                 7899****************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500669.405158IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.89E-13779IPR002100Transcription factor, MADS-box
PfamPF003191.8E-10954IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MESKKKDHEQ KSLKRTSYNN RKECIKKKTM ELATLCGIDA CTVMFGVDGE IESWPEDPKE  60
AKAIIKKFKD LTSNPHKRTT VKDESRRKVV DVPGGEVVSC QENSTEVKGS FENFSTKKVF  120
AEKAEIVGLG RMVGSLCSRP SLLTEYQECL KQVDDKLEAL LKRIEFLRTD QECGCMVNKQ  180
LDYSEMVNKQ LGYSEKKKRL YYPENSSPKR RKVSEEPVFL FDLNFPPPDQ LEASSLSSED  240
CSVLPNR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1196211KKRLYYPENSSPKRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017231061.10.0PREDICTED: uncharacterized protein LOC108205604
TrEMBLA0A161XI250.0A0A161XI25_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37231639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02235.14e-12AGAMOUS-like 51