PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_007584
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB_related
Protein Properties Length: 985aa    MW: 107907 Da    PI: 6.8623
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_007584genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.84.5e-12738782347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+  ++ + ++lG+g+W+ I+r +   Rt+ q+ s+ qky
      DCAR_007584 738 PWTEEEHRMFLLGLQKLGKGDWRGISRSFVVSRTPTQVASHAQKY 782
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF532231.37E-10178351No hitNo description
Gene3DG3DSA:3.40.50.103803.7E-12396349IPR012301Malic enzyme, N-terminal domain
PfamPF003905.5E-78161341IPR012301Malic enzyme, N-terminal domain
SMARTSM012745.3E-98161342IPR012301Malic enzyme, N-terminal domain
PRINTSPR000725.4E-85167191IPR001891Malic oxidoreductase
PRINTSPR000725.4E-85227256IPR001891Malic oxidoreductase
PRINTSPR000725.4E-85263285IPR001891Malic oxidoreductase
PRINTSPR000725.4E-85323341IPR001891Malic oxidoreductase
PRINTSPR000725.4E-85348364IPR001891Malic oxidoreductase
PROSITE patternPS003310348364IPR015884Malic enzyme, conserved site
Gene3DG3DSA:3.40.50.7205.8E-114350638IPR016040NAD(P)-binding domain
SMARTSM009191.3E-115352605IPR012302Malic enzyme, NAD-binding
SuperFamilySSF517356.57E-99352638IPR016040NAD(P)-binding domain
CDDcd053121.67E-142352630No hitNo description
PfamPF039495.3E-98352605IPR012302Malic enzyme, NAD-binding
PRINTSPR000725.4E-85379395IPR001891Malic oxidoreductase
PRINTSPR000725.4E-85482498IPR001891Malic oxidoreductase
PROSITE profilePS5129418.316731787IPR017930Myb domain
SuperFamilySSF466894.79E-16732788IPR009057Homeodomain-like
TIGRFAMsTIGR015575.5E-18734786IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.1E-10735781IPR009057Homeodomain-like
SMARTSM007171.1E-10735785IPR001005SANT/Myb domain
PfamPF002491.1E-9738782IPR001005SANT/Myb domain
CDDcd001672.94E-8738783No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006108Biological Processmalate metabolic process
GO:0055114Biological Processoxidation-reduction process
GO:0003677Molecular FunctionDNA binding
GO:0004471Molecular Functionmalate dehydrogenase (decarboxylating) (NAD+) activity
GO:0051287Molecular FunctionNAD binding
Sequence ? help Back to Top
Protein Sequence    Length: 985 aa     Download sequence    Send to blast
MFFFFVFVQN NSLCGFSGRL RQSQWRPSVV VSAAASSNGR PEERNVTVLA ESSLKEIRDA  60
AAAPVVAVSG GVEDVYGEDS ATEDQSITPW SVSVASGYTL LRDPHFNKGL AFAEKERDAL  120
YLRGLLPPVT VSQDLQVKKL MHNIRQYQVP LQRYMAMMDL QERNERLFYK LLIDNVEELL  180
PVVYTPTVGE ACEKYGSILR RPQGLFISLK EKGKILEVLK NWPEKKIQVI VVTDGERILG  240
LGDLGCQGMG IPVGKLSLYT ALGGIRPSAC LPVTIDVGTN NENLLNDEFY IGLRQRRARG  300
QEYAELLNEF MSAVKQKYGE KVLIQFEDFA NHNAFDLLAK YGSTHLVFND DIQGTASVVL  360
AGIMAALKLV GGSLAEQKFL FLGAGEAGTG IAELIALEMS KQTDIPLEET RKNIWLVDSK  420
GLIVRSRFKT LQHFKKPWAH EHEPVRDIVD AVKAIRPTVL IGSSGVGRTF TKDVVEAMAS  480
FNEKPVIFAL SNPTSQSECT AEEAYKWSKG RAIYASGSPF DAVTYNGKVY VSGQANNAYI  540
FPGLGLGLII SGAIRVHDDM LLAASEALAA EVTQENLDKG LIFPPFTNIR KISSHIAAKV  600
AAKAYELGLA TRLPQPKDLV AYAESCMYSP SYRTYSNNGH NSRTCPTRAG GSGAGVRLFG  660
VRLTDGSIIK KSASMGNLSA LHYHSSSSAA ASPNPPASPS SDALRDPTHV PEEYLSDDPG  720
HASCSTNRRV AERKKGTPWT EEEHRMFLLG LQKLGKGDWR GISRSFVVSR TPTQVASHAQ  780
KYFIRQTNAT RRKRRSSLFD MVTETPSVAE EQFVLPPQAI ETDNNSMPSL NLSLKTDYET  840
IEDTRMEDSQ VEMVKDFKES ATPQAQTEIQ PVIPTFYPAY LPVAFPLWPS SVSIFEEGKG  900
TETSHHEVLK PIAVLRKEPV NVDELVGMSQ LSIGETETGH MEPSALTLKL LGEPSRQSAF  960
HPSTPVSTTS DVNKGNGSGV IQAV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ou5_A0.08763527575Malic enzyme
5ou5_B0.08763527575Malic enzyme
5ou5_C0.08763527575Malic enzyme
5ou5_D0.08763527575Malic enzyme
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtThe chloroplastic ME isoform decarboxylates malate shuttled from neighboring mesophyll cells. The CO(2) released is then refixed by ribulose-bisphosphate carboxylase. This pathway eliminates the photorespiratory loss of CO(2) that occurs in most plants.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017235305.10.0PREDICTED: NADP-dependent malic enzyme, chloroplastic-like
SwissprotP364440.0MAOC_FLAPR; NADP-dependent malic enzyme, chloroplastic
TrEMBLA0A166EM140.0A0A166EM14_DAUCS; Malic enzyme
STRINGPGSC0003DMT4000680270.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16350.15e-78MYB_related family protein
Publications ? help Back to Top
  1. Lipka B,Steinmüller K,Rosche E,Börsch D,Westhoff P
    The C3 plant Flaveria pringlei contains a plastidic NADP-malic enzyme which is orthologous to the C4 isoform of the C4 plant F. trinervia.
    Plant Mol. Biol., 1994. 26(6): p. 1775-83
    [PMID:7858216]