PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_007601

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

bHLH

Protein Properties

Length: 402aa MW: 44611 Da PI: 6.1149

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_007601	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	24.2	6.1e-08	307	347	9	54
HHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 r+RR+ri +++ L++l+P + K++ a++L +A +Y+k L DCAR_007601 307 ARQRRERISEKIRVLQRLVPGgN------KMDTASMLDEAANYLKFL 347 69****************955......**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.875	298	347	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.5E-12	304	353	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.79E-14	304	360	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.02E-10	304	352	No hit	No description
Gene3D	G3DSA:4.10.280.10	6.1E-12	306	356	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.4E-5	307	347	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 402 aa Download sequence Send to blast
MDNLSWECTS PAEADVASPW SNQLNDHMGQ SFANIISGSN VESSHEFTCS SSKQKSEQVV 60 QQVASFDYMR SQEALRLAAE KLLAKSCSYG VASRNAEYFS SANGPQIMDP FSGLMADIGL 120 PVFDRPQYVD VKATASTNTS SFESLDCLKT TTTSNTDTSV EDDDIPSMLF SDCSKLWNLS 180 SMPSADSEKI TAKYCSTSSL ISETNDAISQ CSTKSTNQFS GLISKSQPKL KKPRLEKHQN 240 SSHINFQQPV DSSNIDEEPD LEAIAQMKEM IYRAAVFRPV NIGEPEASEK PKRKNVKISS 300 DPQTVAARQR RERISEKIRV LQRLVPGGNK MDTASMLDEA ANYLKFLRSQ VKTLESLGHK 360 FDFLNCPITT AQFYPFPQHS LLPFNHSFPM QNIHNFSFPK P*

Sequence ? help Back to Top

Protein Sequence Length: 402 aa Download sequence Send to blast

MDNLSWECTS PAEADVASPW SNQLNDHMGQ SFANIISGSN VESSHEFTCS SSKQKSEQVV  60
QQVASFDYMR SQEALRLAAE KLLAKSCSYG VASRNAEYFS SANGPQIMDP FSGLMADIGL  120
PVFDRPQYVD VKATASTNTS SFESLDCLKT TTTSNTDTSV EDDDIPSMLF SDCSKLWNLS  180
SMPSADSEKI TAKYCSTSSL ISETNDAISQ CSTKSTNQFS GLISKSQPKL KKPRLEKHQN  240
SSHINFQQPV DSSNIDEEPD LEAIAQMKEM IYRAAVFRPV NIGEPEASEK PKRKNVKISS  300
DPQTVAARQR RERISEKIRV LQRLVPGGNK MDTASMLDEA ANYLKFLRSQ VKTLESLGHK  360
FDFLNCPITT AQFYPFPQHS LLPFNHSFPM QNIHNFSFPK P*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	307	312	RQRRER

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017232779.1	0.0	PREDICTED: transcription factor bHLH87
Swissprot	Q8S3D2	5e-67	BH087_ARATH; Transcription factor bHLH87
TrEMBL	A0A166EMH1	0.0	A0A166EMH1_DAUCS; Uncharacterized protein
STRING	VIT_09s0002g02700.t01	3e-87	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4350	22	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21330.1	2e-62	bHLH family protein

Link Out ? help Back to Top
Phytozome	DCAR_007601

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]