PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_007612

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

Dof

Protein Properties

Length: 211aa MW: 23180.4 Da PI: 8.1173

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_007612	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124	4.8e-39	17	76	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++lkcprCds+ntkfCyynny+lsqPr++Ck+CrryWtkGG+lrn+PvGgg+rkn k+ DCAR_007612 17 HEHLKCPRCDSSNTKFCYYNNYNLSQPRHYCKNCRRYWTKGGTLRNIPVGGGSRKNTKRM 76 6889****************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	6.0E-28	8	75	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	5.1E-33	18	74	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.124	20	74	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	22	58	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence Send to blast
MQDPSSYSQM KPQITEHEHL KCPRCDSSNT KFCYYNNYNL SQPRHYCKNC RRYWTKGGTL 60 RNIPVGGGSR KNTKRMSSKR ASSLSSTSDH PKQEVTSSAS SLLYNPNVTR YMNDQHQFGS 120 LLDANGQFGN MLEGLNSNGS MQLGDQFTEN QINTGIGFGL NPATVDEFGS GKIDSEGFAE 180 AQNGVDSSCW TGSTSNGWPN LAIYTPGPNF *

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017235361.1	1e-157	PREDICTED: dof zinc finger protein DOF1.7-like
Swissprot	O82155	3e-38	DOF17_ARATH; Dof zinc finger protein DOF1.7
TrEMBL	A0A161X7A4	1e-156	A0A161X7A4_DAUCS; Uncharacterized protein
STRING	XP_010267036.1	1e-62	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	2e-38	DOF zinc finger protein 1

Link Out ? help Back to Top
Phytozome	DCAR_007612

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]