PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_007632
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family NF-YA
Protein Properties Length: 283aa    MW: 31766.7 Da    PI: 9.62
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_007632genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA103.51.9e-32137193158
    CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                  dep+YVNaKQy++Il+RRq Rakle++kkl +k+rkpylheSRh hAl+R+RgsgGrF
  DCAR_007632 137 DEPIYVNAKQYSAILRRRQYRAKLEAQKKL-IKNRKPYLHESRHLHALKRARGSGGRF 193
                  79****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.4E-36135196IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.317136196IPR001289Nuclear transcription factor Y subunit A
PfamPF020456.5E-27138193IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006166.9E-23139161IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860141161IPR018362CCAAT-binding factor, conserved site
PRINTSPR006166.9E-23170193IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MAASSPYSKS SKQLGFHFQE QDLSPTQSSG QSYPEVASAV ESNPYVPEMI ATKSSYKGMH  60
EKREELHSKA TLSMQAHDYV YPPSVNFSKH FSGVPHLYPE SYCPGLLATV PQSMIYHPHM  120
MTAASTRVPL PLDFSQDEPI YVNAKQYSAI LRRRQYRAKL EAQKKLIKNR KPYLHESRHL  180
HALKRARGSG GRFLNKKLED SNPNVAHTEE NAPESELHPS PQNYRQKPSP ASWSSKNVNI  240
SDNDKMFLQQ ETMFSAYASH MGDSRKGGGV DVCGGNYLTV FR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A9e-21137201266NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017232446.10.0PREDICTED: nuclear transcription factor Y subunit A-3
RefseqXP_017232447.10.0PREDICTED: nuclear transcription factor Y subunit A-3
SwissprotQ9LNP62e-41NFYA8_ARATH; Nuclear transcription factor Y subunit A-8
TrEMBLA0A166ENT00.0A0A166ENT0_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA48002027
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17590.41e-43nuclear factor Y, subunit A8
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]
  3. Djami-Tchatchou AT,Ntushelo K
    Expression Profile of Stress-responsive Arabidopsis thaliana miRNAs and their Target Genes in Response to Inoculation with Pectobacterium carotovorum subsp. carotovorum.
    Pak. J. Biol. Sci., 2017. 20(3): p. 147-153
    [PMID:29023006]