PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_007638
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB_related
Protein Properties Length: 266aa    MW: 29293.2 Da    PI: 7.3433
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_007638genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.85.2e-13958347
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                     +W++eE+e l+ +v+++G+g WktI           +R+  ++k++w+++
      DCAR_007638  9 KWSKEEEEALKAGVEKHGPGKWKTILTDPDfalalSNRSNIDLKDKWRNL 58
                     8***********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.0E-15258IPR009057Homeodomain-like
PROSITE profilePS5129415.178263IPR017930Myb domain
SuperFamilySSF466899.72E-17475IPR009057Homeodomain-like
SMARTSM007171.3E-7661IPR001005SANT/Myb domain
PfamPF002495.3E-9858IPR001005SANT/Myb domain
CDDcd116609.17E-22858No hitNo description
SMARTSM005268.8E-10101175IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150417.844103180IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.103.7E-9118186IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.36E-10118185IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005382.2E-7118173IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MKMGIQKHKW SKEEEEALKA GVEKHGPGKW KTILTDPDFA LALSNRSNID LKDKWRNLGI  60
ASIPQAPKED DLVLTITCGS LPTTQNADNA LALVPVNGAT ATNTPRTSQD GGIIINRSMV  120
FDAISSIKDS NGADFNAIAS FIEQRHKVPY NFRRYLSSMV RRLTLQGRLE KVEQCYKIKN  180
SGSSSKIPTP KARDVNPGTC KNFDVSNPDT PEAAARIAAF WLVEADNQAC LTAQAVEEAE  240
RISTMAEESE IMFEAVKEFC KQYNL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017234219.10.0PREDICTED: telomere repeat-binding factor 4-like
TrEMBLA0A166EP470.0A0A166EP47_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25042355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72740.23e-51MYB_related family protein