PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_007643
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB_related
Protein Properties Length: 610aa    MW: 67638.2 Da    PI: 8.454
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_007643genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding254.4e-08495542448
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      WT  E  +lv++v+++G g+W+ I r +     +Rt  ++k++w+++l
      DCAR_007643 495 WTLNEVVKLVEGVARYGVGRWSEIKRVFFashSHRTSVDLKDKWRNLL 542
                      ****************************9*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.963487546IPR017930Myb domain
SuperFamilySSF466892.94E-16489546IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.4E-12489548IPR009057Homeodomain-like
SMARTSM007179.2E-9491544IPR001005SANT/Myb domain
CDDcd116602.68E-18493543No hitNo description
PfamPF139216.6E-7495553No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 610 aa     Download sequence    Send to blast
METVVEVEVN AESESEVSKT NSAEKSPKLI ADPVVYQLVR VEGDGRLVPA TDEEVYEVED  60
LLDVGKSTRN LADTGKDVEC TPNNKCSSGK LQSENLETCS NKSGEVLDLE IHSMKSNTQI  120
QEEVVPSLAP SSIESILSES GECSNPRVGV TRSESLSSSA CNISKPDFSM VKGEICLNNL  180
SVRELHEIFR ALFGRVTTNK DKQWLKRRIS MGLTNSCDVS STTFVIENNK VVKKGKEENS  240
NIDDVNNTKD PIKGASDKIW KRSSYVAKKE VESHLNGSGK RMRNANVVYD HDKEDVLTES  300
RADKRVRKPT KRYIEEVSEG ETRETSGKVT SKVKGSGHCQ SSPRPIVNPI ENIRSDGKPY  360
VMRQDSLGGS GIQIPYVSRV RRGRPRENYM TLMKLQPSEL GMPSRAVKKA FEICDPRLDS  420
EEGNKITKAG SSPERFQQPL ASKPEKAEEN SERITADFVK DDLQLQHTDP SSSDDGIATV  480
PTANGGMRRK HHRIWTLNEV VKLVEGVARY GVGRWSEIKR VFFASHSHRT SVDLKDKWRN  540
LLRASFAQMP LDKGVDSSRK NASIPIPAPI LARVRALAEM EGQFPPNLSG VKIVGHSSRD  600
VLERRSGYL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017236407.10.0PREDICTED: uncharacterized protein LOC108209800 isoform X1
TrEMBLA0A166EP910.0A0A166EP91_DAUCS; Uncharacterized protein
STRINGVIT_09s0002g01480.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA118812023
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.15e-93TRF-like 6