PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_007866
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family GeBP
Protein Properties Length: 462aa    MW: 50310.5 Da    PI: 5.066
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_007866genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57398.65.7e-31226317798
       DUF573   7 wseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWgs 98 
                  w  +Dei+lL G++dfka+tg +  + +d fye vk+ +s+k +k+ql+eK++rLKkKf+++v k ++g+ep+fsk+h++k fels+kiWgs
  DCAR_007866 226 WHWKDEIALLGGIVDFKAETGGDWNSKLDVFYESVKDLLSVKLTKNQLSEKVKRLKKKFQTNVGKFQNGEEPVFSKPHESKLFELSQKIWGS 317
                  999*******************9999****************************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045042.9E-27226316IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MARKAQAVDI LPPPSSSDDE TQDQDGSSSS TDDEQPQQHP PKTQKPQESE ESDNSDDETE  60
DDEPEAAPQP VVKKPSLREA PEESDDSDSG TESDETQNSP SASAFTVKPV VQKAVAKSPE  120
PKTPSSKAPR VKSRAKRPTE SEETDKVSKA VSKNQEIGKG KGGSSKRPAE AEAEKIDKVS  180
KSKKSKVTNG DGQSVGKVDK GSKGKKAVSG DEDGGEVEEK KSIAKWHWKD EIALLGGIVD  240
FKAETGGDWN SKLDVFYESV KDLLSVKLTK NQLSEKVKRL KKKFQTNVGK FQNGEEPVFS  300
KPHESKLFEL SQKIWGSEGT GADGNDSKVK STKKKGKDDG IVVGNANTST PVKSNANREL  360
FVQEEVKNTI VEDRREETQD VWSLYPNLCA SVESEVSSFS ILQGKNLKDH VKKIISGMGE  420
EKARELEDEW EAIHGMDLQL YARRTQLISK QAGAIADVSN I*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017236784.10.0PREDICTED: mediator-associated protein 1-like
TrEMBLA0A161XIQ20.0A0A161XIQ2_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23692041
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G11510.11e-19DNA-binding storekeeper protein-related transcriptional regulator