PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_007880
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family TCP
Protein Properties Length: 450aa    MW: 49432.2 Da    PI: 7.6662
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_007880genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP120.71.7e-37622192134
          TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.......... 88 
                   g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk++eWLl++a+ +i el+++++ss  ++ ++ s+++ +s    g          
  DCAR_007880  62 SGGKDRHSKVWTSKGLRDRRVRLSVTTAIQFYDLQDRLGYDQPSKAVEWLLKAAESSISELPSLNTSSFPDTpKQLSDEKRSS----Ggtiehgfdsn 155
                  689*************************************************************6655544442222222222....12233445555 PP

          TCP  89 .................kaaksaakskksqksaasalnlak.esrakarararertrekmrikn 134
                                   + +ksa +s +++++ +  l++++ e r kar+rar r +ek + k+
  DCAR_007880 156 dlemdmdpnhhyqnqnvSLSKSACSSTSETSKGSGGLSISRsEIRIKARERARGRAAEKEKEKE 219
                  566666666666666653333333444555555556888887888***********99998875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.1E-4363217IPR005333Transcription factor, TCP
PROSITE profilePS5136932.18964122IPR017887Transcription factor TCP subgroup
PROSITE profilePS513708.763197216IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:1903508Biological Processpositive regulation of nucleic acid-templated transcription
GO:2000306Biological Processpositive regulation of photomorphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MDMDDIQNQG CKFPRSRSGG NKIGQKGDDE DEGDAKRIAS GNDIGRFCGW PSSRIVRVSR  60
ASGGKDRHSK VWTSKGLRDR RVRLSVTTAI QFYDLQDRLG YDQPSKAVEW LLKAAESSIS  120
ELPSLNTSSF PDTPKQLSDE KRSSGGTIEH GFDSNDLEMD MDPNHHYQNQ NVSLSKSACS  180
STSETSKGSG GLSISRSEIR IKARERARGR AAEKEKEKET DSLFPAHHHS VTPNSSFTEL  240
LTSGGGGVNN HNTSRNARAP HLQKSSPSSR QWPNAPMDYF GTGLNHPSPN YPGHIQLGNS  300
LPQPMMISPF TVTSGDQQHH ELQQFSFVQD NLVPTASGGS DYNLNFSISS GLAGFNRGTL  360
QSNLSTMPQL HQRFSPMDGP HSSPFFISSA VPNGSTTETH QQHPQHHPQF PAGLQLYYGD  420
AGRHSEQQQH HHYSSTSQVL PHYSPVYII*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-2369123155Putative transcription factor PCF6
5zkt_B1e-2369123155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00006PBMTransfer from 493022Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017236914.10.0PREDICTED: transcription factor TCP2
RefseqXP_017236916.10.0PREDICTED: transcription factor TCP2
RefseqXP_017236917.10.0PREDICTED: transcription factor TCP2
RefseqXP_017236918.10.0PREDICTED: transcription factor TCP2
TrEMBLA0A162AX100.0A0A162AX10_DAUCS; Uncharacterized protein
STRINGEOY276511e-141(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24642252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.24e-41TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2