PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_007935

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

M-type_MADS

Protein Properties

Length: 256aa MW: 28759.6 Da PI: 4.7334

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_007935	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	52.5	6.1e-17	10	51	2	43
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 +i+n+ r+ t+ kR++g++KK eEL +LC+++++ ii+s+ DCAR_007935 10 FISNDATRKATYKKRKKGLMKKVEELTTLCGIDACAIIYSPY 51 8***************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	16.512	1	49	IPR002100	Transcription factor, MADS-box
SMART	SM00432	4.0E-23	1	60	IPR002100	Transcription factor, MADS-box
CDD	cd00266	7.73E-19	2	85	No hit	No description
SuperFamily	SSF55455	1.57E-22	2	95	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.2E-7	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	8.8E-17	10	52	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.2E-7	23	38	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence Send to blast
MTRKKVKLAF ISNDATRKAT YKKRKKGLMK KVEELTTLCG IDACAIIYSP YDEQPDVWPD 60 IAGVERVVEK FKSMPEMQQS RKMLNQESFT RQRIAKTNEQ LKKQLRDNRE KEMTEVMSQC 120 LTGQLGLHNL TLPDLNDLGF LVDQKLQEIN KKMNEISLQE ATQQEPVVIP EEAPQQQQVV 180 PTTVSDNVGL LAGGVVEEQR LDIAGGSSDV DAYGLVPQWF NDAVVGNNAT ANDQNLGFMN 240 MFGDENNPAA WDNYF*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	2	24	RKKVKLAFISNDATRKATYKKRK
2	21	25	KKRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269\|PubMed:16798889, ECO:0000305\|PubMed:26462908}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017233695.1	0.0	PREDICTED: agamous-like MADS-box protein AGL80
Swissprot	Q9FJK3	1e-60	AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBL	A0A166EXK1	0.0	A0A166EXK1_DAUCS; Uncharacterized protein
STRING	XP_009376202.1	9e-74	(Pyrus x bretschneideri)
STRING	POPTR_0005s00420.1	2e-74	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1532	23	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48670.1	7e-58	AGAMOUS-like 80

Link Out ? help Back to Top
Phytozome	DCAR_007935

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]