PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_007998

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

HB-other

Protein Properties

Length: 314aa MW: 35256.8 Da PI: 8.6025

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_007998	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	63.1	4e-20	28	84	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +r+R+ t++qle+Le++F ++y++ +e+ +LA+klgL e+qV++WF rR+k+kk DCAR_007998 28 KRERHMKTPSQLEALEKAFTAKKYLTPAEMDQLAAKLGLLESQVRMWFYHRRMKYKK 84 799*****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.59E-18	17	85	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.3E-20	18	85	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.912	25	85	IPR001356	Homeobox domain
SMART	SM00389	3.7E-18	27	89	IPR001356	Homeobox domain
Pfam	PF00046	2.0E-17	28	84	IPR001356	Homeobox domain
CDD	cd00086	1.49E-15	28	86	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence Send to blast
MNSSMDSDPE AVIIINSSQQ DAGFNRSKRE RHMKTPSQLE ALEKAFTAKK YLTPAEMDQL 60 AAKLGLLESQ VRMWFYHRRM KYKKESPGKR SLKVSGRKKR MIRYSSSDES ESESDEFGEI 120 TPDEYEEPTN AAALTGHRGC SANSSDGTVV EGSRHKKLKL EYPPSKEAQS LLIKSACVRS 180 HFVVQSQNAG EEIETSKKSL SKVEAELDDM EKKVQSAKKE VKDLKSRLGE DDVIAALRTE 240 LTAMKAGLDA AQLEKDAAAK LFEEKLNAKN QELGDLHRQL ETERAWHKED KHEAYARFGN 300 DVVALIRKFK ATT*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	77	83	RRMKYKK
2	77	84	RRMKYKKE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017233701.1	0.0	PREDICTED: homeobox protein Hox-B2a-like
TrEMBL	A0A166EZ93	0.0	A0A166EZ93_DAUCS; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28420.1	2e-12	homeobox-1

Link Out ? help Back to Top
Phytozome	DCAR_007998