PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_008017
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family ERF
Protein Properties Length: 214aa    MW: 23037.5 Da    PI: 5.4027
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_008017genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.87.3e-203180255
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 +y+GVr ++ +gr++AeIrdp   +k++r++lg+f+tae Aa+a++ a+++++g
  DCAR_008017 31 HYRGVRKRP-WGRYAAEIRDP---NKKARVWLGTFDTAELAARAYDDAAREFRG 80
                 6********.**********9...347************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.05E-213189IPR016177DNA-binding domain
SMARTSM003807.0E-363194IPR001471AP2/ERF domain
PfamPF008479.2E-143180IPR001471AP2/ERF domain
PROSITE profilePS5103223.8813188IPR001471AP2/ERF domain
CDDcd000181.07E-203189No hitNo description
Gene3DG3DSA:3.30.730.105.6E-323188IPR001471AP2/ERF domain
PRINTSPR003677.6E-113243IPR001471AP2/ERF domain
PRINTSPR003677.6E-115470IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MATAASETVE DAANGKESSK GVEVGGGEEV HYRGVRKRPW GRYAAEIRDP NKKARVWLGT  60
FDTAELAARA YDDAAREFRG DKAKTNFPAP DTRRNDGEIQ VSQSPSPTST VESSSQERFA  120
AAVNPNLAVL NGGVGSWLGY GSGYGLPLMY PYYCKPYGPM QGYGLPPMLY RNPEFRANLL  180
AARSDSASSS VVDVNPTRKG LDLDLNLPPP SED*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-213198570ATERF1
3gcc_A4e-213198570ATERF1
5wx9_A1e-202688972Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017232340.11e-155PREDICTED: ethylene-responsive transcription factor 4-like
TrEMBLA0A166EZY11e-154A0A166EZY1_DAUCS; Uncharacterized protein
STRINGSolyc10g009110.1.18e-42(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.11e-23erf domain protein 9