PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_008025

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

SBP

Protein Properties

Length: 137aa MW: 15842.5 Da PI: 7.1372

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_008025	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	126.4	1.1e-39	53	129	1	77
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +Cqve C+ad+ +ak+yhrrhkvCe+h+kap +l++gl qrfCqqCsrfhel efD++krsCrr+L +hn+rrrk + DCAR_008025 53 CCQVEYCTADMGNAKSYHRRHKVCEFHAKAPDALIAGLPQRFCQQCSRFHELPEFDDSKRSCRRHLLGHNQRRRKVS 129 6*************************************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	1.0E-33	46	115	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	30.556	51	128	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	4.02E-36	52	131	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	4.6E-31	54	127	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 137 aa Download sequence Send to blast
MEITKQEGGK RKKEINEEEK YEDEDEQEDD NEKKKAQSYS VSKEAGGGST QACCQVEYCT 60 ADMGNAKSYH RRHKVCEFHA KAPDALIAGL PQRFCQQCSR FHELPEFDDS KRSCRRHLLG 120 HNQRRRKVSY HFQGEE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	4e-35	45	127	2	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional factor. Binds to the promoter of the SQUAMOSA gene.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017236205.1	2e-97	PREDICTED: squamosa promoter-binding protein 1-like
Swissprot	Q38741	2e-45	SBP1_ANTMA; Squamosa promoter-binding protein 1
TrEMBL	A0A166F089	6e-96	A0A166F089_DAUCS; Uncharacterized protein
STRING	Solyc02g077920.2.1	8e-48	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA749	24	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33810.1	6e-39	squamosa promoter binding protein-like 3

Link Out ? help Back to Top
Phytozome	DCAR_008025

Publications ? help Back to Top
Klein J,Saedler H,Huijser P A new family of DNA binding proteins includes putative transcriptional regulators of the Antirrhinum majus floral meristem identity gene SQUAMOSA. Mol. Gen. Genet., 1996. 250(1): p. 7-16 [PMID:8569690]