PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_008106
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family bHLH
Protein Properties Length: 189aa    MW: 21175.5 Da    PI: 5.3709
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_008106genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.37.3e-102163754
                 HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH  7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                 ++Er+RR+++ s++ eLr l+Pk      + ++K +i + A+ YI++L
  DCAR_008106 21 MAERKRRKKLGSRLLELRALVPKI-----TNMTKPAIITDAISYIHEL 63
                 79*********************6.....58**************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.54E-151179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.62E-91268No hitNo description
Gene3DG3DSA:4.10.280.106.1E-121486IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.5221463IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.5E-112069IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-72163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048658Biological Processanther wall tapetum development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MGIGSRHSDD QDSEFKSPNL MAERKRRKKL GSRLLELRAL VPKITNMTKP AIITDAISYI  60
HELKSHVQEL SDEILSMEAT SNEHEQKMEM SEVGSAQEME NWGIEPEVKV SKIDSNKLWV  120
KLLFQKTRGG LITTIFEAMN VLGFVPIDMS AITSKGAVLI TSHIEVMEDG MQATEKIKEL  180
LLEIVTTY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12229ERKRRKKL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00091SELEXTransfer from AT4G21330Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017233725.11e-135PREDICTED: transcription factor DYT1-like
TrEMBLA0A161XJ671e-134A0A161XJ67_DAUCS; Uncharacterized protein
STRINGXP_009597290.12e-58(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA91071622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21330.13e-30bHLH family protein