PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_008114

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

bHLH

Protein Properties

Length: 238aa MW: 26291.8 Da PI: 7.2168

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_008114	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.5	5e-13	82	128	5	54
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + rE+ RRdr+N++f+eL ++l + + +K +Ka iL A++ +++L DCAR_008114 82 KACREKMRRDRLNDKFQELSSILEPG---RTPKTDKAIILSNAIRMVNQL 128 678********************8...8**************9999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.849	77	128	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.6E-10	81	128	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.11E-10	81	131	No hit	No description
SMART	SM00353	2.6E-10	83	134	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.7E-13	83	151	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.3E-14	84	150	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence Send to blast
MLSTEENNSN WMFGYGLLDS VPVPGGDFPS FQAHFQWHAN DFTDTTGLSP EFGDSLGSSD 60 AFKEHGSRKR MKSGSCSISG SKACREKMRR DRLNDKFQEL SSILEPGRTP KTDKAIILSN 120 AIRMVNQLRD EAKKLKESHD ALQDKLNELK AEKTELRDEK QKLKAEKEIL EQQVKAFHPQ 180 PGFLPPAVVP SPFAGASQIS GGKMMPFMGY PGVPMWQFTT PAAVDTAQDH VLHSPVA*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017234648.1	1e-178	PREDICTED: transcription factor bHLH115-like
Swissprot	Q9C682	2e-78	BH115_ARATH; Transcription factor bHLH115
TrEMBL	A0A166F2Z5	1e-176	A0A166F2Z5_DAUCS; Uncharacterized protein
STRING	EMJ13136	1e-105	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA950	24	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51070.1	9e-81	bHLH family protein

Link Out ? help Back to Top
Phytozome	DCAR_008114

Publications ? help Back to Top
Liang G,Zhang H,Li X,Ai Q,Yu D bHLH transcription factor bHLH115 regulates iron homeostasis in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(7): p. 1743-1755 [PMID:28369511]