PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_008280
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family LSD
Protein Properties Length: 99aa    MW: 10503.4 Da    PI: 7.9271
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_008280genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD144.52.6e-142953125
      zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                 C gC+tlL+Y rGA+sV+C++C+tV
  DCAR_008280 29 CRGCHTLLMYIRGATSVKCTCCHTV 53
                 9***********************9 PP
2zf-LSD1421.5e-136791125
      zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                 Cg+C+ lL+Y +GA sVRCa+C++V
  DCAR_008280 67 CGSCQMLLMYQYGAQSVRCAVCHFV 91
                 ***********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.90.10.101.9E-52490No hitNo description
SuperFamilySSF486953.59E-62492IPR011031Multihaem cytochrome
TIGRFAMsTIGR010536.7E-142655IPR005735Zinc finger, LSD1-type
PfamPF069431.3E-112953IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010532.8E-126494IPR005735Zinc finger, LSD1-type
PfamPF069432.9E-126791IPR005735Zinc finger, LSD1-type
Sequence ? help Back to Top
Protein Sequence    Length: 99 aa     Download sequence    Send to blast
MPIPLAPYPL PPAPYTPPAN GTENAQLVCR GCHTLLMYIR GATSVKCTCC HTVNLAMEAN  60
QVAQVNCGSC QMLLMYQYGA QSVRCAVCHF VTSVGVII*
Functional Description ? help Back to Top
Source Description
UniProtNegative regulator of programmed cell death and hypersensitive response (HR). Positive regulator of callus differentiation. {ECO:0000269|PubMed:15915636}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. Down-regulated by dark. {ECO:0000269|PubMed:15915636}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017235309.15e-48PREDICTED: protein LOL1 isoform X1
RefseqXP_017235310.15e-48PREDICTED: protein LOL1 isoform X1
RefseqXP_017235311.15e-48PREDICTED: protein LOL1 isoform X2
SwissprotQ0J7V94e-42LSD1_ORYSJ; Protein LSD1
TrEMBLA0A162AXZ08e-65A0A162AXZ0_DAUCS; Uncharacterized protein
STRINGVIT_02s0012g00990.t011e-44(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16792467
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.32e-42lsd one like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]