PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_008297
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family ARR-B
Protein Properties Length: 555aa    MW: 61453.1 Da    PI: 5.2779
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_008297genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like87.11.8e-27322375155
      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                  k++++Wt+eLH++Fv+ave+L G ++A+P++ile+mkv+gLt+++v+SHLQkYR+
  DCAR_008297 322 KAKVDWTSELHKKFVQAVEKL-GVDQAIPSKILEVMKVEGLTRHNVASHLQKYRM 375
                  6799*****************.********************************8 PP
2Response_reg23.62.7e-09201261109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl+ + e + +   r+ le+ +y +v ++ + +eal  + +++  +++ ++ ++  ++d    +k +++++ +lp i+ ++    +++ +++ +Ga 
   DCAR_008297  20 VLLLEQETDSAAQTRSKLEEMDY-IVSVFCNETEALSAISNSTdgFHVAIVEVSNDNSDS--RFKFLETAK-DLPTIMTSDIHCLSTMMKCIALGAV 112
                   67788888888999999******.***************999999******999998764..456665655.899*****9999************* PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   +fl Kp + e++ +
   DCAR_008297 113 EFLRKPLSDEKIKN 126
                   *********99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23001.1E-1116159No hitNo description
SuperFamilySSF521721.08E-1216134IPR011006CheY-like superfamily
PROSITE profilePS5011020.54219132IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5129414.738319378IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.2E-26320378IPR009057Homeodomain-like
SuperFamilySSF466891.7E-18320379IPR009057Homeodomain-like
TIGRFAMsTIGR015571.0E-25322377IPR006447Myb domain, plants
PfamPF002494.4E-8325374IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 555 aa     Download sequence    Send to blast
MVLNANDLLE WKDFPKGLRV LLLEQETDSA AQTRSKLEEM DYIVSVFCNE TEALSAISNS  60
TDGFHVAIVE VSNDNSDSRF KFLETAKDLP TIMTSDIHCL STMMKCIALG AVEFLRKPLS  120
DEKIKNIWQH VLHKAFSAGG KDISESVKPL REYVTPSPQL CSGNGESNHQ LSIKTEYENQ  180
NQEQSAGSDK YPAPSTPQIK RGERLLDDGD CQDQANIIVD KDNMEPDGES KSVDNTYGDT  240
VVETTFSNIV AESTVQVSPR QGSGDGDIRP EDQLADDSKD KSNDSSPCPD KGTTVNTSIE  300
AKTNSKASRL RNVCGLKASR KKAKVDWTSE LHKKFVQAVE KLGVDQAIPS KILEVMKVEG  360
LTRHNVASHL QKYRMQQRHI LPKDRNYVSR KPVMVFPSYQ NTSFVPGGQG YQGWIQPSPY  420
PPGVQMWGAP CYPGWQTTEN WQWTPYPAMH ADAWGCPVMP PPPVGPCPPF PQSTPQCQNS  480
EYVNISQMPD NLFDLCPAEE EVIDKVVKEA ISKPWLPLPL GLKPPSTDSV LNELSKQGIS  540
SVPPHTQRHT SPLT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A7e-17319380263ARR10-B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017235853.10.0PREDICTED: two-component response regulator-like APRR2
RefseqXP_017235854.10.0PREDICTED: two-component response regulator-like APRR2
TrEMBLA0A166F8590.0A0A166F859_DAUCS; Uncharacterized protein
STRINGVIT_02s0012g00570.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA56731531
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.61e-121ARR-B family protein