PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_008318
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB_related
Protein Properties Length: 671aa    MW: 77425.9 Da    PI: 9.4243
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_008318genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.85e-08465504345
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                       WT+eE e l++  k++G++ W++ a+ +   R + q+k+ ++
      DCAR_008318 465 EWTEEEKEMLLEQYKKHGNN-WSLMAKDFK--RHRLQVKDTYR 504
                      6*****************99.********7..77778887665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.6E-6389460IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-6390453IPR009057Homeodomain-like
CDDcd001670.0033392458No hitNo description
PROSITE profilePS500904.681392458IPR017877Myb-like domain
SuperFamilySSF466893.51E-9438511IPR009057Homeodomain-like
PROSITE profilePS5129310.213461511IPR017884SANT domain
SMARTSM007176.7E-6462509IPR001005SANT/Myb domain
CDDcd001679.20E-5465507No hitNo description
Gene3DG3DSA:1.10.10.602.0E-8465517IPR009057Homeodomain-like
PfamPF139211.3E-13466523No hitNo description
SMARTSM007172.1511577IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.3E-6518575IPR009057Homeodomain-like
PROSITE profilePS500907.375577630IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 671 aa     Download sequence    Send to blast
MFWRKGKVEK LDNGHVKMSV RVGESDVVGK SGKKGKRRKK IEKGGVDEVR DGLDVEEGGI  60
VKSKKGKRGK MDVVEEVTDH MDVEEDGIGK SRKKGKKSKK KEMVGVGEVM DCLDVEVDGI  120
ENSRKKGKKI KNKDMDGVGE VTDRVDVEED GIGKSRKKGK KSKEETDGVE EMNDQTNVEN  180
EQNLETRVEN KKKKKGKEMV AGGESMTDTQ DKEYVVEKRK KKKKKTKTRK FETFENQDAL  240
NEKTETEAKE SNSIAGNVEK KKKKRKRTVE EDDDDNDTGK KKGCYREDVG NSLPDDNGMV  300
AIEKVKMKKK KKKRQRKNEE ITEMDGLSSK AKDNETTNVP GKEKKTKSVM KDPENPKSKE  360
KKKVRFSNDL EEVRFSDDLE VVPSDSLVQG KRFTPEEDET LRAAVEEYIQ SHCLGEKGVE  420
MVMKCISHRK VRNCWNEIRK ALPYRPKSAI YSRAHTLFER GETHEWTEEE KEMLLEQYKK  480
HGNNWSLMAK DFKRHRLQVK DTYRRIKMKR NKGHWSQEEY QTLFDHVNID LRAKLDEEKK  540
SKHGMLRDNI CWTAISDKLS TRADSLCCMK WYNQLTSPMV SQGIWADSDD YRLLDALFNL  600
DACCIEDVDW DNLIEHRSGD VCRKRWDQMV LHIGLHGVKS FAEQVEVLAN RYRPELTEAR  660
EAWDSKPLVP *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1260265KKKKRK
2262267KKRKRT
3307313KKKKKKR
4308316KKKKKRQRK
5310315KKKRQR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017235980.10.0PREDICTED: RNA polymerase I termination factor-like
TrEMBLA0A166F8S10.0A0A166F8S1_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10291429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.11e-108MYB_related family protein