PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_008342
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family ERF
Protein Properties Length: 215aa    MW: 24118.9 Da    PI: 5.4067
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_008342genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.81.7e-20116167256
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                  +y+GVr+++ +gr++AeIrdp +ng  +r++lg++g+ae+Aa a+++a+ +++g+
  DCAR_008342 116 KYRGVRQRP-WGRFAAEIRDPAKNG--TRVWLGTYGSAEDAALAYDKAAFRMRGA 167
                  8********.***********9987..**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.9E-31115174IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-22116175IPR016177DNA-binding domain
SMARTSM003801.2E-38116180IPR001471AP2/ERF domain
CDDcd000187.97E-32116174No hitNo description
PfamPF008478.2E-15116166IPR001471AP2/ERF domain
PROSITE profilePS5103223.854116174IPR001471AP2/ERF domain
PRINTSPR003677.5E-13117128IPR001471AP2/ERF domain
PRINTSPR003677.5E-13156176IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MDNNMSFDSD FSFLDSIRRH LLDDHAAADT NPSNSPAIYC RSDPSSTDNN NSRELELKLN  60
DNDSQNMVLN DMLNDAVNIG SMSSMQEPIC DVKCEADQNY INQAAVEVAA QPYMRKYRGV  120
RQRPWGRFAA EIRDPAKNGT RVWLGTYGSA EDAALAYDKA AFRMRGARAI LNFPLLVNSG  180
LPEPVKVVDK RYSESSECSW EENVSPKKRK RVVR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-35115180469ATERF1
3gcc_A4e-35115180469ATERF1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017234188.11e-159PREDICTED: ethylene-responsive transcription factor 1A-like
TrEMBLA0A166F9D91e-157A0A166F9D9_DAUCS; Uncharacterized protein
STRINGXP_004152388.18e-56(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47220.14e-38ethylene responsive element binding factor 2