PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_008395

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

TCP

Protein Properties

Length: 173aa MW: 18675.9 Da PI: 7.7305

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_008395	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	99.7	5.2e-31	23	101	4	81
TCP 4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssss 81 +k + + + v+gR RR+Rl+a+caar+F+L++eLG+++d++tieWLl+ a+pai+ +tgt++++a+++ + +s + s DCAR_008395 23 AKPVNTERNSRVNGRSRRIRLPAKCAARVFQLTRELGHKTDGQTIEWLLRRAEPAIIRATGTGTIPAHATvTYGSMRAS 101 67778889999*****************************************************999766533333322 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	22.371	27	81	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	9.3E-28	28	125	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 173 aa Download sequence Send to blast
MASSSKTALP KTAATKDHRD SAAKPVNTER NSRVNGRSRR IRLPAKCAAR VFQLTRELGH 60 KTDGQTIEWL LRRAEPAIIR ATGTGTIPAH ATVTYGSMRA SGRSVAAPLS GSGVEPQGSE 120 PSVGSGNVEY PERGYMSLLM DPMEEAELQH HEERLWVEIS DEVENGNVIA QD*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017233775.1	8e-52	PREDICTED: transcription factor TCP21-like
TrEMBL	A0A166FAN9	1e-123	A0A166FAN9_DAUCS; Uncharacterized protein
STRING	GSMUA_Achr7P20990_001	6e-34	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA248	24	201

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	5e-34	TCP family protein

Link Out ? help Back to Top
Phytozome	DCAR_008395