PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_008430
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family TALE
Protein Properties Length: 292aa    MW: 33287.5 Da    PI: 6.724
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_008430genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.78.4e-082402732154
                  HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
     Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                  k +yp+++++++L +++gL+ +q+ +WF N+R +
  DCAR_008430 240 KWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 273
                  469*****************************87 PP
2ELK25.23.9e-09194215122
          ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                  ELK +L++++++++ ++++E++
  DCAR_008430 194 ELKIELKQGFRSKIEDVREEIL 215
                  9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.8E-172670IPR005540KNOX1
PfamPF037903.5E-162969IPR005540KNOX1
SMARTSM012562.0E-2583138IPR005541KNOX2
PfamPF037911.3E-1886137IPR005541KNOX2
PROSITE profilePS512139.097194214IPR005539ELK domain
PROSITE profilePS5007111.758214277IPR001356Homeobox domain
SuperFamilySSF466893.46E-16216282IPR009057Homeodomain-like
SMARTSM003894.7E-11216281IPR001356Homeobox domain
CDDcd000866.57E-11217278No hitNo description
Gene3DG3DSA:1.10.10.601.5E-25221280IPR009057Homeodomain-like
PfamPF059209.7E-18234273IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010089Biological Processxylem development
GO:0010192Biological Processmucilage biosynthetic process
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MQEQVEGMLG SGGGGMSHDF SGEQHHRAKV EIATHPLYEQ LLSAHVACLR VATPIDQLPL  60
IDAQLSQSHH VLRSYAAQQN QIHHQHPGER QELDNFLGQY LLLLCSFKEQ LQQHVRVHAV  120
EAVMACREIE QNLHSLTGAT LGEGTGATMS EDEDELQMDF SLDQSGSNAH DMMGFGPLLP  180
TESERSLMER VRQELKIELK QGFRSKIEDV REEILRKRRA GKLPGDTTSV LKEWWQQHSK  240
WPYPTEDDKA KLVEETGLQL KQINNWFINQ RKRNWHSNSN SMTSLKSKRK R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A1e-12217273864Homeobox protein PKNOX1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1270290RKRNWHSNSNSMTSLKSKRKR
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in secondary cell wall biosynthesis. {ECO:0000269|PubMed:15980264}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017231463.10.0PREDICTED: homeobox protein HD1-like
SwissprotQ9FPQ81e-169KNAT7_ARATH; Homeobox protein knotted-1-like 7
TrEMBLA0A162AYC50.0A0A162AYC5_DAUCS; Uncharacterized protein
STRINGGorai.003G163800.11e-174(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67732329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62990.11e-157KNOTTED-like homeobox of Arabidopsis thaliana 7
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. He JB, et al.
    KNAT7 positively regulates xylan biosynthesis by directly activating IRX9 expression in Arabidopsis.
    J Integr Plant Biol, 2018. 60(6): p. 514-528
    [PMID:29393579]