PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_008464

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

YABBY

Protein Properties

Length: 232aa MW: 25384.6 Da PI: 7.8663

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_008464	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	216.9	6.2e-67	22	190	5	169
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee....lleelkveeenlksnvekeesasts.vs 97 ssseq+Cyv+Cn C+t+lavsvP +slfk+vtvrCGhC++ll n++ aa ++l+ +++ +e +n+ ++++ a ++ + DCAR_008464 22 SSSEQLCYVHCNICDTVLAVSVPCSSLFKTVTVRCGHCSNLLPANMRGLLLPAAAPDQLQFPHSFFfppsTHHNFLDEIRNTAPDLVSNQLAISDfSP 119 689*******************************************99999999998753221122346666656655555555444444444044 PP YABBY 98 seklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfg 169 s+ + +e pr+p ++rPPekrqrvPsaynrfik+eiqrika+nPdishreafs+aaknWahfP+i fg DCAR_008464 120 SSGIGL-GFDEHPRPPAINRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSTAAKNWAHFPHIQFG 190 444444.45677999******************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	2.8E-67	23	190	IPR006780	YABBY protein
SuperFamily	SSF47095	8.38E-8	135	185	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	1.9E-4	140	184	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence Send to blast
MFSPNSNSPS VPSSLNHHLP SSSSEQLCYV HCNICDTVLA VSVPCSSLFK TVTVRCGHCS 60 NLLPANMRGL LLPAAAPDQL QFPHSFFFPP STHHNFLDEI RNTAPDLVSN QLAISDFSPS 120 SGIGLGFDEH PRPPAINRPP EKRQRVPSAY NRFIKDEIQR IKAGNPDISH REAFSTAAKN 180 WAHFPHIQFG INLMHSDQAT FKKTTATSTV RQQGNADDTT LAKDCFPTPA I*

Functional Description ? help Back to Top
Source	Description
UniProt	May be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000250}.
UniProt	May be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000269\|PubMed:17351053}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by WOX3. {ECO:0000269\|PubMed:17351053}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017234120.1	1e-171	PREDICTED: protein YABBY 4-like
Swissprot	Q01JG2	4e-65	YAB5_ORYSI; Protein YABBY 5
Swissprot	Q0JBF0	4e-65	YAB5_ORYSJ; Protein YABBY 5
TrEMBL	A0A166FCV9	1e-169	A0A166FCV9_DAUCS; Uncharacterized protein
STRING	XP_002532573.1	2e-88	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA381	24	163

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45190.1	1e-57	YABBY family protein

Link Out ? help Back to Top
Phytozome	DCAR_008464

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Khanday I, et al. Genome-Wide Targets Regulated by the OsMADS1 Transcription Factor Reveals Its DNA Recognition Properties. Plant Physiol., 2016. 172(1): p. 372-88 [PMID:27457124]