PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_008495
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family C2H2
Protein Properties Length: 427aa    MW: 47413.6 Da    PI: 6.9798
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_008495genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.70.0016178200123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C+ C+k+F+++  L  H  +H
  DCAR_008495 178 FQCKACKKVFNSHQALGGHRASH 200
                  89**************9999888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003554.31537IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.7871537IPR007087Zinc finger, C2H2
PfamPF139120.00291537IPR007087Zinc finger, C2H2
PROSITE patternPS0002801737IPR007087Zinc finger, C2H2
SuperFamilySSF576671.63E-6177200No hitNo description
SMARTSM003550.073178200IPR015880Zinc finger, C2H2-like
PfamPF139125.3E-9178202IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.014178205IPR007087Zinc finger, C2H2
PROSITE patternPS000280180200IPR007087Zinc finger, C2H2
SuperFamilySSF576671.63E-6258285No hitNo description
PfamPF139121.6E-11262286IPR007087Zinc finger, C2H2
PROSITE profilePS501579.598263285IPR007087Zinc finger, C2H2
SMARTSM003550.42263285IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280265285IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MGTTGDNKQP AAILHYCRIC HRGFSCGGAL GGHMRAHNIA EVINRIQEQQ HQQQEGLVSG  60
DKAEGNKHSY FLRTTSNRFS NLQSPVRGEY SCKRARLDDD RLLSPISSSV MEVEDGGARK  120
GYIWKFVGVK GNEKGCFSRE EEDLANVLVT LSNNSTDSSI CKNKTKEACM APLAKGLFQC  180
KACKKVFNSH QALGGHRASH KKVKGCYAAK LDDLTDDEIQ EDDYIGHDET PMSQEPPPDP  240
PCNPTSQNTS HHDHDSTRAE KVHECSICHR VFSSGQALGG HKRFHWLQTD STFITPFHDQ  300
FQFHYYGAEN SQKSTTSCSK DSELLDLNLP PDQTVDEKST PTYLSPGMNS IIKLNSDEEN  360
KGSENYNKIE NCGRNNIGVN KLHESDHNYN GEEGRPCKLA KHCNVRDLKL EGMSSPWLQV  420
GIASNK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017231192.10.0PREDICTED: zinc finger protein ZAT1-like
TrEMBLA0A166FDN80.0A0A166FDN8_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19102243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.12e-22C2H2-like zinc finger protein